Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46640 57 / 4e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005993 [exp] 467 / 2e-166 AT2G46640 81 / 1e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102600 [exp] 117 / 2e-30 AT2G46640 104 / 2e-26 unknown protein Potri.002G175300 [exp] 109 / 9e-28 AT2G46640 76 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030218 pacid=23153188 polypeptide=Lus10030218 locus=Lus10030218.g ID=Lus10030218.BGIv1.0 annot-version=v1.0 ATGAATCCTACCATGTCATTAATTTGGGACCCTTTTGTGGAGATCCTCCAATCCTTTCAACCTTTTTCTATTGCTAGTACTGTTCCTGGACACGTATCAT CATCTCAGGCATTATCTTTCGCCATCGTTGCTCTCTCGAGTCCTCTCCCAGGCCGTACTTTTCCTTTACTTAAACTTGGTTTTTGTCATCTCTCCGGCCA ATTGGTTGTACAACTTGTTCTGGACATGAAGATCTTCAATTGGGTGCAGAGAAGGATCCGTCCAAGTGACTCCTCCAGAGAAGGGCTGGTTGGAACTGTC AAGAAATCTGAACCCATCAGAAACGATGCTGATCAGGAGCAAATAGTACTGATCAGACAACCTGCTGTTGTTGAGGTTCTTGACGGTTGGAAAGATAGCA TGCTGACAATTGGCACATTAGGCTTCGATCTCGTAAAACCCTCTGAATACTCTCTTCTTAAAGGTGGAGACCAAGGAATCAAAATACCTGACGAATATCA GCAACAAGAAGAAGATGATGATGATGACGATGAGAGCAGTAATGAAGAAGATGAGGTCAACCCTTTGATGCATACAACATTTCCAGTCAACGGGTGGATT CCGGACTCGGATGCTGAGAAACCGGAATTCGTGTCGTTGAGCGAGATCAAGATCGAATGTGTCGCTGCCTTTGATGACAATCCTGAAAGGAAGATATTAA GGGGAGAAAGGACAACCCTAGCGGAACTGTTCCTCGCCGAATCTGATCAGGACCTGAAAATGAAGGCAGATAATTGTGTGGACAGTACTACTACTGCTAC TACAACCATGGAGCCAAATTCAGGTAAAAAGAAGCTCAAGCATGGTTCAAAGAATGGCTTTCCTTTTGCCAAGAAGCTCAAGTATCGTGTCGGGATGGAG GATTCTTCAAAAAAAATACGCCATATGGTGAACAAGTTGTTGAAGAGGAAAATCCATCCTGTTCAGGAATCCAACCAATGCTGCGTTTCTGACAACGGAA ACCACCGAAACCAAGAAGCAGGCGACTCGATTTGCCTGCTTCAGGCTCGTCCAGGTATCATTTCCGTTTTCCACATGTTTCAAATTCATCCTCGTTGTAA CGAGCTTTAA
AA sequence Show only first row Show all	>Lus10030218 pacid=23153188 polypeptide=Lus10030218 locus=Lus10030218.g ID=Lus10030218.BGIv1.0 annot-version=v1.0 MNPTMSLIWDPFVEILQSFQPFSIASTVPGHVSSSQALSFAIVALSSPLPGRTFPLLKLGFCHLSGQLVVQLVLDMKIFNWVQRRIRPSDSSREGLVGTV KKSEPIRNDADQEQIVLIRQPAVVEVLDGWKDSMLTIGTLGFDLVKPSEYSLLKGGDQGIKIPDEYQQQEEDDDDDDESSNEEDEVNPLMHTTFPVNGWI PDSDAEKPEFVSLSEIKIECVAAFDDNPERKILRGERTTLAELFLAESDQDLKMKADNCVDSTTTATTTMEPNSGKKKLKHGSKNGFPFAKKLKYRVGME DSSKKIRHMVNKLLKRKIHPVQESNQCCVSDNGNHRNQEAGDSICLLQARPGIISVFHMFQIHPRCNEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46640			unknown protein		Lus10030218 [exp]	0	1
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10029893 [exp]	2.0	0.9377
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10004699 [exp]	3.2	0.9288
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10040265 [exp]	4.2	0.9138
AT2G41905			unknown protein		Lus10042354 [exp]	4.5	0.9149
AT1G04560			AWPM-19-like family protein (....		Lus10014456 [exp]	14.5	0.8561
AT3G19330			Protein of unknown function (D...		Lus10035125 [exp]	16.6	0.8186
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	18.1	0.8850
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10025085 [exp]	18.2	0.9034
					Lus10026314 [exp]	20.8	0.8926
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	24.5	0.9199

Compare expression of checked genes

Lus10030218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.