Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16420 376 / 2e-128 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G07740 159 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09060 140 / 4e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 131 / 6e-35 unknown protein AT5G46100 125 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 122 / 1e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G14580 114 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02060 114 / 3e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 114 / 5e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05600 112 / 6e-28 EMB3101 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005989 [exp] 602 / 0 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10005540 [exp] 140 / 7e-38 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 136 / 1e-36 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 127 / 1e-32 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 125 / 5e-32 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 123 / 3e-31 AT4G01400 570 / 0.0 unknown protein Lus10013972 [exp] 120 / 8e-31 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 120 / 9e-31 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 120 / 5e-30 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031600 [exp] 392 / 2e-134 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G105900 [exp] 135 / 5e-36 AT4G01400 576 / 0.0 unknown protein Potri.003G204100 [exp] 127 / 3e-33 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 125 / 1e-32 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G179300 [exp] 123 / 1e-31 AT1G05600 649 / 0.0 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G148700 [exp] 122 / 4e-31 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G379500 [exp] 120 / 6e-31 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G223300 [exp] 120 / 2e-30 AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.010G234500 [exp] 119 / 1e-29 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 118 / 2e-29 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030222 pacid=23153052 polypeptide=Lus10030222 locus=Lus10030222.g ID=Lus10030222.BGIv1.0 annot-version=v1.0 ATGTTACGCTGTGCTCAATCTCGCAGCCGCCTAACCAACCCAACCTCCACCGCCGCCGCCGTACTCATCCGTTCAATTAAGCAAGCGTCCTCGTTTTCCG CCATCAACGTCGACGCTGAATTCCTCAAATCATACAAAGTAACTCCCCCAATCAAACCCTGGCCGCAGCAGCTCTACCCTAAGCGCCTCGTGACCATGAT CACTCGCCAGCAGAATCTCGACCTCGCACTCCAAATCTTCAACTACGCAGGCAAATACCACCCCGGATTCTACCACAACTACGACACTTACGAATCCATC ATTCAGAAGCTCTCCAGAGCTCGCGCATTCGAAGCCATGGAGTCTCTTCTCTCCGAGCTGCGTCATTCTCAAATCAAGTGCGGCGAGAATCTCTTCATAA CCGTGATTCGTAACTACGGACTCGCCGGGAAGCCCAAGCTTTCCCTCCAGACGTTCCTCCGCATCGAGGATTTTAAAGTGCAGCGATCGGTGAGGTCGTT GAACACTCTCCTCAACGCGTTCGTGCAGAACAAGAGGTACGATCTCGTCCACTCCATGTTTAAAGATTGTAAGGATCAGTACGGAGTGGTTCCCAATGTC TTCACTGCCAACATTTTGATCAACGCTCTGTGTAAGTTGAACGACATGGAAGCTGCACTCCAGGTGCTCGACGAAATGCCTGTAATGAGAATGATCCCGA ATGTAGTGACTTACACTACAATTCTAGCCGGTTACGCTTCAAAAGGCGATATGGAGAAGGCGAAGAAGGTTCTAACCGATCTTTTCAATAAAGGATGGCT CCCCGATGCTACGACCTACACAATCTTGATGGATGGATATTGCAGGCAAGGAAGACTCGCCGATGCTAACAAAGTTATGGACGATATGGAAGGGGGGCCA AATGATGTTAATTAA
AA sequence Show only first row Show all	>Lus10030222 pacid=23153052 polypeptide=Lus10030222 locus=Lus10030222.g ID=Lus10030222.BGIv1.0 annot-version=v1.0 MLRCAQSRSRLTNPTSTAAAVLIRSIKQASSFSAINVDAEFLKSYKVTPPIKPWPQQLYPKRLVTMITRQQNLDLALQIFNYAGKYHPGFYHNYDTYESI IQKLSRARAFEAMESLLSELRHSQIKCGENLFITVIRNYGLAGKPKLSLQTFLRIEDFKVQRSVRSLNTLLNAFVQNKRYDLVHSMFKDCKDQYGVVPNV FTANILINALCKLNDMEAALQVLDEMPVMRMIPNVVTYTTILAGYASKGDMEKAKKVLTDLFNKGWLPDATTYTILMDGYCRQGRLADANKVMDDMEGGP NDVN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	3.0	0.8966
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	4.5	0.8795
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	4.9	0.8689
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	8.2	0.8827
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	9.8	0.8798
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	12.8	0.8302
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	13.8	0.8652
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	14.7	0.8776
AT3G60410			Protein of unknown function (D...		Lus10007850 [exp]	16.6	0.8224
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018486 [exp]	17.0	0.8343

Compare expression of checked genes

Lus10030222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.