Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 127 / 8e-30 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 124 / 8e-29 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 124 / 2e-28 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT3G46510 114 / 5e-26 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 110 / 9e-25 PUB15 Plant U-Box 15 (.1) AT2G28830 102 / 7e-22 AtPUB12 PLANT U-BOX 12 (.1) AT1G29340 92 / 6e-19 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G23030 91 / 1e-18 PUB11 ARM repeat superfamily protein (.1) AT1G60190 89 / 8e-18 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G49780 87 / 1e-17 PUB26 plant U-box 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005988 [exp] 1248 / 0 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 223 / 8e-61 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 216 / 5e-58 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 209 / 1e-55 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 204 / 2e-54 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 115 / 3e-26 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 108 / 8e-24 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 106 / 5e-23 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10040659 [exp] 104 / 2e-22 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175800 [exp] 720 / 0 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 719 / 0 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 550 / 0 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 230 / 1e-62 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 216 / 1e-58 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 216 / 1e-58 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 175 / 9e-45 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 156 / 1e-38 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.008G112900 [exp] 152 / 2e-37 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 149 / 1e-36 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10030224 pacid=23153075 polypeptide=Lus10030224 locus=Lus10030224.g ID=Lus10030224.BGIv1.0 annot-version=v1.0 ATGGCAATGGAAGGCATGACTACTGCCTCCTTCCCAGGTTCGGAGCTTCTTTCCCAGGTTGTTGATGGAATGGCTGAGATCATTCACTCCGCCAAAGGTG TTATCCTGAAATCGGGATGTTTTCAGGAACTCGCTGCCTACCTGGAAAGAATCATTCCTGTTTTAAAAGAATTGAACACGAAGAATAACGTAGCAGGCAA TTCAGAGAGCTTGAACAACGCCGTTCAAATTCTGAACGGTGAAGTCAAGGCTGCAAAGCTACTGACTGCAGACTGCACAACGAAGAACAAGGTCTATCTC CTCATAAACTGCAGAACTATAACCAAGCATTTGCAGCAGATAACAAGAGAAATCAGTAGAGCTATAAGTCTTATTCCTTTGGCTTCTCTGGATATTTCGT CTAGTGTAATTGAGGACATTACGGATCTGTGTCTTCAAATGCAAAGAGCCGAGTTTAAGGCAGCAGTAGCAGAAGAAGAGATATTGGAGAAGATTGAGTC AGGTATACAAGAGAGGAAAGTCGACCGTTCTTACGCCAACAGCTTAGTTGCTCAGATAGCACAAGCTGTCGGGATTTCGAACGAGCAGTCTGCATTGAAG AAAGAACTTGAGGAATTCAAGGAAGAGGTTGAGAATACCAGACTAAGGAAGGATCAGGCTGAAGCTATACAGATGGATCAGATAATTGCTTTGCTCGAAA GGGCAGACGCTGCATCGTCTCCTCGGGAGAAAGAGAGGAAATACTTCACCAAGAGGAAGTCTTTGGGTAGTCAACCGTTGGAGCCTCTCCAGTCATTCTA CTGTCCAATTACAAGGGATGTTATGGTTGATCCTGTGGAGACTTCTTCAGGACAGACATTCGAGAGAAGTGCCATTGAGAAGTGGATGGCTGAGGGTAAC AACTTGTGTCCTTTGACTCAGGTCGCTCTAGACTCGTCGATTCTTCGTCCGAACAAAACTCTGAGGCAATCAATAGAAGAATGGAAAGACAGGAACACAA TGATCACAATTGCTACAATGAAGTCGAAACTTGAATCTGATGAAGAGGAAGAAGTTCTGCAAAGTCTACGGCAGCTGAAAGATCTCTGCCAACAAAATGA TCAGCATCGGCAATGGATTATACTTGAGAACTATATTCCTGTCCTTATTCAACTGCTTTGTTCGAAAAATCGTGATGTGAGGAATAATACTCTTGCCATC CTCTGCTATCTGGCGAAAGACAGTGATGATGCCAAGGAAAGAGTTGCAAATGTTAATGATGCAATCGATTTGATTGGTCGATCTCTTGGACGTCGTACTG GGGAAAGGAAGTTGGCAGTGGCCTTACTGTTAGAACTGTCAAAAAGCAATAAAGTGAGGGAGTTCATTGGGAAGGTACAAGGTTGTATACTCCTACTTGT GACCATGTCAAGAAGTGATGACGATGAAGCTGCCACAGATGCACAACAGTTACTAGACAATCTCTCCTTCTCTGATTATAACATCATACAAATGGCAAAA GCAAACTGTTTTACACATTTTCTGCAGCGACTATCTACCGGGCTAGACCGGCCGTTACTTGAAATTCTCTTCCGCCACAGTTCGCCATCCTCGAGTTTGC GGGAGCAGGTTGCGATCATTATCATGCACCTTGCAAGATCTACAGCGTCTCAGCAGGAACCCGGTCTGGAACCGATTTCGATGCTGGAAACTGATGAAGA CACGTTCAGGCTCTTCTCTTTAGTCAATCTGACAGCAGCTGGAGTGCAGGAAAGGATCCTGCAAACCTTCCAGGCCTTGTGCCAGTCTCCCTCGGCATCA TTTATCAAAGCTAAGTTAATTGAGTCGTCTGCGGTGCATGTGTTAGTTCAGCTGTGTGAGCATGAGAACTCGAATGTTCGATCAAATGCCGTGAAGCTGT TCTGCTTATTAGTAAAAGACGGCGATGTAGCAATCATCATGGAACACATTGACAAGAAGTATCTCGAAACCTTGGTCGGGATCATCCAGAAATCAGACGA CAAGGAAGAAGTCGCTTCCTCGATAAGCATAATTTCGTACCTTCCAGAGGAAGGCCAGATCACAGAATGGCTACTTACCGCCGGAGCACTCGACAAAATC TCCAAATTCCTCCGAGATGGCACAAAGAACAACAACAAACTGATCGAAAATGCAGCACGCGCCATGACTCGTTTCGTTTTGCCAACGAACCTCGAACGGC AGAAGAAAGCAGCGGAGATCGGAGTCATTCCTCTACTGGTAAAGCTGCTACTTGACTCCGGAAGCAGTACCTTGACAAAGAAGTATGCTTCCCTTTGTCT CGATCAATTCTCACAGAGCTCGCCGTCGTTAGCCCAGCCGTTGAGAAGACACAGGGGGATATGGTGCTTCTCCGCCCAACACGAACCGGCCTGCATTGTC CACGGCGGAATCTGTACCGTGGAATCGTCGTTCTGCCTCGTGGAGGCCGATGCTGTACGGCCACTTGTAAGGGTGCTCGAGGACTCGGACCCTGAAGTCT GCGAGGCCTCGTTGGGCGCGCTGTTGACTCTGATCGAAGCCGAAAGGCTTCAGAGCGGCAGCAAAGTTCTGTCGGAAGCGGAAGCGATTCTCCCTATGAT AAAGTTTCTGTCTTGGTCTGATTCCCCTAGGTTGCAGGAGAAGGCATTGTTTGCTCTGGAGAGGATCTTTCGGCTGCCGGAGTTTAAACAGAAGTACGGA GGGGCTGCTCAGATGCCTTTGGTTGACTTGACGCAGAGAGGTAGTAACCAAATGAAGTCTCTTTCTGCTCGCATCCTGGCTCACTTGAATATTCTCCATG ATCAATCGTCTTACTTCTGA
AA sequence Show only first row Show all	>Lus10030224 pacid=23153075 polypeptide=Lus10030224 locus=Lus10030224.g ID=Lus10030224.BGIv1.0 annot-version=v1.0 MAMEGMTTASFPGSELLSQVVDGMAEIIHSAKGVILKSGCFQELAAYLERIIPVLKELNTKNNVAGNSESLNNAVQILNGEVKAAKLLTADCTTKNKVYL LINCRTITKHLQQITREISRAISLIPLASLDISSSVIEDITDLCLQMQRAEFKAAVAEEEILEKIESGIQERKVDRSYANSLVAQIAQAVGISNEQSALK KELEEFKEEVENTRLRKDQAEAIQMDQIIALLERADAASSPREKERKYFTKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWMAEGN NLCPLTQVALDSSILRPNKTLRQSIEEWKDRNTMITIATMKSKLESDEEEEVLQSLRQLKDLCQQNDQHRQWIILENYIPVLIQLLCSKNRDVRNNTLAI LCYLAKDSDDAKERVANVNDAIDLIGRSLGRRTGERKLAVALLLELSKSNKVREFIGKVQGCILLLVTMSRSDDDEAATDAQQLLDNLSFSDYNIIQMAK ANCFTHFLQRLSTGLDRPLLEILFRHSSPSSSLREQVAIIIMHLARSTASQQEPGLEPISMLETDEDTFRLFSLVNLTAAGVQERILQTFQALCQSPSAS FIKAKLIESSAVHVLVQLCEHENSNVRSNAVKLFCLLVKDGDVAIIMEHIDKKYLETLVGIIQKSDDKEEVASSISIISYLPEEGQITEWLLTAGALDKI SKFLRDGTKNNNKLIENAARAMTRFVLPTNLERQKKAAEIGVIPLLVKLLLDSGSSTLTKKYASLCLDQFSQSSPSLAQPLRRHRGIWCFSAQHEPACIV HGGICTVESSFCLVEADAVRPLVRVLEDSDPEVCEASLGALLTLIEAERLQSGSKVLSEAEAILPMIKFLSWSDSPRLQEKALFALERIFRLPEFKQKYG GAAQMPLVDLTQRGSNQMKSLSARILAHLNILHDQSSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	0	1
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	2.0	0.8151
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	2.0	0.7750
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	2.4	0.8063
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10005918 [exp]	2.8	0.8118
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	4.5	0.7343
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	5.3	0.7596
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	7.3	0.7662
AT4G38260			Protein of unknown function (D...		Lus10013833 [exp]	8.0	0.7484
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006573 [exp]	8.4	0.7718
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10028038 [exp]	9.4	0.7084

Compare expression of checked genes

Lus10030224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.