Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08510 471 / 3e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13410 334 / 7e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 340 / 2e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 327 / 3e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 321 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G20540 321 / 8e-106 MEF21 mitochondrial editing factor 21 (.1) AT2G29760 323 / 2e-104 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 318 / 1e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 318 / 3e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 316 / 9e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005987 [exp] 708 / 0 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 343 / 3e-113 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 321 / 3e-106 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10018223 [exp] 323 / 2e-104 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 320 / 2e-104 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 321 / 1e-103 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 320 / 3e-103 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 317 / 4e-103 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017243 [exp] 311 / 4e-102 AT1G13410 539 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G175900 [exp] 537 / 0 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 352 / 9e-117 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 347 / 8e-116 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 347 / 8e-115 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 340 / 2e-112 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 331 / 1e-109 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.018G040100 [exp] 335 / 4e-109 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 332 / 1e-108 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 333 / 2e-108 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 328 / 2e-106 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030225 pacid=23153192 polypeptide=Lus10030225 locus=Lus10030225.g ID=Lus10030225.BGIv1.0 annot-version=v1.0 ATGCCTGTGAGAGACGTCCTTACTTGGAACTCCATGATTGCAGGGTACGGAAAATGTGGAGATATGGAGGCGGCGCTGGAGGTGTTTGATAAAATGCCGA GGAAGTGTGTGGTTTCCTGGAATGCGATGATATCTGGATATGCTCAGAATGGATTGTACGCCAAGGCATTGGAGTTCTTTCTGAAAATGGAGGAGGATGG TACCGTGAGACCGAATGAAGTAACGCTTGCTAGTGTTCTTCCGGCTTGTGCGAATTTAGGAGCTTTGGAATTGGGGGAGAGGATTGATGATTACGCTAAA GGGAATGGATTGCTGAAGAATGTGTTTGTCAGCAATGCTTTGCCGGAAATGTATTCCAGGTGCGGTGAGATTCATGTTGCCAGGCGTGTGTTTCATGAGA TGGGGAACAGGAGGAATCTCTGTTCGTGGAACTCGATGATCATAGGCTTGGCTGTGCATGGCGGAAGCAATGACGCTTTGAGTCTGTATGATGAAATGCT GAAAGAAGGAACTGCACCTGACGACGTAACATTCGTAGCACTTCTACTAGCCTGCACGCACGGCGGCATGGTCAGCAAAGGCCAAAAACTTCTAGAATCA ATGGAGGCCGATTTCGGAATCTCCCCCAAGCTGGAGCATTACGGGTGCATGGTGGATCTCCTCGGCCGAGCCGGACAACTGCAACAAGCCTACGATCTAA TCAACAGCATGCCGATGAGACCGGATTCTGTGATATGGGGAACACTGCTGGGTGCCTGCAGCTTCCACAACAATGTCGAGCTTGCAGAGGTATCGGCAGA AGCTCTCTTCGAGCTCGAGCCGTGGAATCCGGGGAACTACGTGATTCTTTCGAATGTGTATGCATCGGCTGGGAGATGGGACGGAGTTGCGAGGCTTAGG AAGATGATGAGAGGCGGGAAGATTACGAAAGCTGCTGGGTATAGCTTTGTGGAGGTTGAAGGAAGAGTGAAAAAGTTTGTGGTTGGTGATGGATTGCATC CGAGAAGTGATGAAGTTTACGGATTGTTACGGGTTGTTTATTCCGAGATTGGGAAACGGAAATATGAACTTGAAGAACTTTGGTTAATGGAATAG
AA sequence Show only first row Show all	>Lus10030225 pacid=23153192 polypeptide=Lus10030225 locus=Lus10030225.g ID=Lus10030225.BGIv1.0 annot-version=v1.0 MPVRDVLTWNSMIAGYGKCGDMEAALEVFDKMPRKCVVSWNAMISGYAQNGLYAKALEFFLKMEEDGTVRPNEVTLASVLPACANLGALELGERIDDYAK GNGLLKNVFVSNALPEMYSRCGEIHVARRVFHEMGNRRNLCSWNSMIIGLAVHGGSNDALSLYDEMLKEGTAPDDVTFVALLLACTHGGMVSKGQKLLES MEADFGISPKLEHYGCMVDLLGRAGQLQQAYDLINSMPMRPDSVIWGTLLGACSFHNNVELAEVSAEALFELEPWNPGNYVILSNVYASAGRWDGVARLR KMMRGGKITKAAGYSFVEVEGRVKKFVVGDGLHPRSDEVYGLLRVVYSEIGKRKYELEELWLME

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	2.8	0.7597
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	5.7	0.7352
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	6.0	0.7490
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	8.0	0.7707
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	8.5	0.7413
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	9.5	0.7037
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	18.3	0.7091
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	20.5	0.6987
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011562 [exp]	25.1	0.6407
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	28.1	0.7355

Compare expression of checked genes

Lus10030225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.