Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07950 120 / 5e-36 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT1G01210 115 / 5e-34 DNA-directed RNA polymerase, subunit M, archaeal (.1) AT2G38560 41 / 0.0002 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005984 [exp] 219 / 9e-75 AT1G01210 112 / 2e-33 DNA-directed RNA polymerase, subunit M, archaeal (.1) Lus10025131 [exp] 45 / 6e-06 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 42 / 8e-05 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 42 / 0.0001 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 41 / 0.0001 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 41 / 0.0001 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10015458 [exp] 40 / 0.0003 AT3G25940 134 / 6e-41 TFIIB zinc-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015900 [exp] 174 / 4e-57 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1) Potri.010G142500 [exp] 43 / 6e-06 AT4G16265 146 / 3e-47 RNA polymerases M/15 Kd subunit (.1) Potri.016G138100 [exp] 42 / 4e-05 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.013G015000 [exp] 40 / 9e-05 AT3G25940 132 / 4e-41 TFIIB zinc-binding protein (.1) Potri.006G109300 [exp] 41 / 0.0001 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS)
Representative CDS sequence Show only first row Show all	>Lus10030228 pacid=23153143 polypeptide=Lus10030228 locus=Lus10030228.g ID=Lus10030228.BGIv1.0 annot-version=v1.0 ATGGAACGGCGCCGCTTCCGTTTAAATTTAAATAACAAAAAAAAGCTAGTAGGGTTCAACGAACAAGAAATTCAAGGGTTTCAAGGGGACAGCCGATTGA TTCTGCAATCACTTCCGATCCGACGCAGCGGGGAAGCAATGGAGTTCTGCCCAACCTGCGGAACCTTGTTGAAGTATGAGTTGGGCAATCCGGCCAGGTT CTTCTGCCGGACTTGTCCTTACATCTGTTCACTTCAGGGCAGGAATAAGATCAAGAGGAAGCTGCAGCTTCAGAAGAAGGAATTCGAACCGGTTTTCACC CTCGACGATATGATGAAGGGCGGCTCTGAAACTGAAGCAACATGTCCTCATTGTAACTTCGGGAAGGCGCGTTTTCAGCAGCTGCAAACTCGATCAGCTG ACGAGCCAGCCACCACTTTTTACTTCTGCCTCAACGAGAAGTGTTCTAGAATGTGGCGTGAGGACTGA
AA sequence Show only first row Show all	>Lus10030228 pacid=23153143 polypeptide=Lus10030228 locus=Lus10030228.g ID=Lus10030228.BGIv1.0 annot-version=v1.0 MERRRFRLNLNNKKKLVGFNEQEIQGFQGDSRLILQSLPIRRSGEAMEFCPTCGTLLKYELGNPARFFCRTCPYICSLQGRNKIKRKLQLQKKEFEPVFT LDDMMKGGSETEATCPHCNFGKARFQQLQTRSADEPATTFYFCLNEKCSRMWRED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07950			DNA-directed RNA polymerase, s...		Lus10030228 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	13.1	0.8844
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	13.3	0.8786
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10006117 [exp]	18.2	0.8651
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	19.1	0.8703
					Lus10001993 [exp]	19.7	0.8354
AT3G55290			NAD(P)-binding Rossmann-fold s...		Lus10007039 [exp]	21.0	0.8692
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10013773 [exp]	22.1	0.8700
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10012548 [exp]	26.5	0.8736
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	28.0	0.8693
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	29.2	0.8390

Compare expression of checked genes

Lus10030228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.