Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18750 560 / 0 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 538 / 0 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 509 / 1e-173 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 484 / 2e-164 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT3G48260 471 / 2e-159 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 456 / 4e-151 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G22420 437 / 2e-145 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 421 / 2e-140 WNK9 Protein kinase superfamily protein (.1.2) AT3G51630 422 / 8e-140 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 404 / 7e-133 ZIK2, WNK4 with no lysine (K) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005983 [exp] 1201 / 0 AT3G18750 523 / 3e-178 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10033225 [exp] 553 / 0 AT5G41990 620 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10000334 [exp] 553 / 0 AT5G41990 597 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10017318 [exp] 545 / 0 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10003215 [exp] 531 / 7e-179 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10020236 [exp] 467 / 2e-155 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 462 / 2e-153 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10041947 [exp] 457 / 7e-153 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 457 / 1e-147 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101500 [exp] 696 / 0 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.001G085500 [exp] 565 / 0 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.003G145300 [exp] 565 / 0 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G057300 [exp] 553 / 0 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G037200 [exp] 469 / 3e-158 AT5G41990 429 / 8e-145 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.010G087900 [exp] 473 / 4e-157 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 464 / 5e-154 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 464 / 6e-154 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.015G084600 [exp] 449 / 4e-150 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 449 / 5e-150 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030229 pacid=23153055 polypeptide=Lus10030229 locus=Lus10030229.g ID=Lus10030229.BGIv1.0 annot-version=v1.0 ATGCGCTGGTGTAGTTTGTGGGGATCCTTTTTCGTTCTGCTTTGCTGCTTCGGGGTTGTTGCGGCGGCGGCGGCGGTGGTGTCGTCCTCCTCCTCCTCGC TGGCGGCAGGAATGAACGGCGACGATAGTGGCTGCCTTGGCGGCGGGGTTGGTGGATATGGATTAGTATTTGCTTCTCCTTTTCATTCTCCTTCTCCCTC TTCTTCTTGTTCCGGTCTTAACACGACGCATTCCGCTGTAGATCGACCTCGTGAATTTGATTTCGTCGAGAGGGATCCTTCCGGTAGATATGTTCGTTAT GATGAGGTTCTGGGCAGGGGAGCTTTCAAAACAGTTTATAAGGCGTTTGATGAAGTAGACGGCATAGAAGTAGCATGGAACCGAGTGAAAATCGACGACG TGATGAGATCAGAAGAAGATCTGAAGAAGCTTTATTCAGAAGTACACTTGCTGAGATCACTGAAGCACGAAAGCATAATCTCGCTGTACGATTCGTGGGT GGACGAGAAGAAGAAGACGATTAATATGATCACTGAGCTCTTCACGTCTGGGAATCTGAGACAGTACCGGACAAAGCACAAGAACGTAGACATGAAGGCA GTGAAATGGTGGGCGAGGCAAATCCTGCACGGACTGGCGTACCTACACAACCATAACCCACCAGTTATTCACAGAGATTTAAAGTGTGACAACATCTTCG TTAATGGAAACCATGGAGAAGTCAAGATCGGAGACCTAGGATTGGCCACTGTTATGCAGCAGACCACTGCTAGAAGTGTCATTGGAACTCCCGAGTTCAT GGCTCCGGAGCTGTACGAAGAGCAATACAACGAGCTGGTAGATGTGTATTCCTTCGGGATGTGCATGTTGGAAATGGTTACTTTCGAGTATCCGTATAGC GAATGCAAGAATCCTGCTCAGATCTTCAAGAAAGTTACCTCTGGTATCAAACCGGCTTCGCTTAGCAAGGTGAGAGATCCACAAGTGAAGGAGTTCATTG AGAAATGTCTGCTTCCTGCACCTTGCCGATTATCAGCAAAGGAGCTCCTCCGAGATCCGTTCCTCCAGCCCAAGGGTGCATTGTCACCACGTGATCCATT GCGATTGCCTAAGCTATGCGTGCCGCCAATTACTGTGCCTGCGAAATCACCGGCATTGTCCATGGAGCTCGACAACAACTTGACCAAGCTCTCATTGAGG ACATGTACGGGGAGCAACCTTCCGAGTCCGACGCATCAGCCAGATATGGAGCTCAGAAGGGTGCACCGGAACCACGAGTTCCGGCTGAAAGGGATGAAAA ATGAAGACAACTCGGTCTCGCTGAGCATGCGTATAGCCGATTCTCATGGTCAGGTGAAGAACATCCATTTCATCTTCTATCTCGATAGCGATACCGCAGT AGCTGTAGCGGCCGAGATGGTCGAGCAGCTCGAGTTAGCAGCAGAGCACGATGTGGTGTTCATAGCTGAGTTTATAGATTACTTGATGATGAAGCTTCAT CCTGGTTGGAAGCCTTCATTTGATTGCGCTTCGAGCGGAGCGGTAACCCCCTTTGTCGAGTCCCCGGTGCATAGAAACAGCAGAAACTCGTCTCCATGGG GCTCGGTGCTAACCTGTACTCCACCAGAATCGGCCGTTGAGCTCCTCTCTCGGTTAAGCGCAGGACAATGTTCAGGCGGTGAAGTGGATGATCATCAATG TCAGCATCTGCAGCAATTCGATTACAACTCTTCTCCTAGCTTGGCTCCCATGGACGATCATGACTCTTCGAATGGATCCGCTGTCTCGGAGGGCGATGCT GAACATTTATCTTCCTGTAAGGTCAATGCAGCAATTTTTTGTCTCCGCGGTTACGAAAGCGATGGATGCATTCAAGGGTTAGCTACCGGATCCGATTCTG ATTTCGAGCTGATGGACACGTATTTCGCCTACCAATGTGGGAAAACCGACAGTAACGGTAGTTGCGAATCCTTGACGAACCTGGATTTGGCATTCCCTAA ATTGAGTCCAGCACCGGCAGCTAATAACTACAGAGATCCGGACATGGAGCTGAAGGAGGAACTCGAAGCCATCGAGGCACAGTACCGGAACTGGTTTCAG GAGCTTGCCCGAATGAAGGAGAAGGCAATGCAAGCTACAAGAGAGAGATGCTTGGCAAAGAAGAAACTCTCTGTTTGCTAA
AA sequence Show only first row Show all	>Lus10030229 pacid=23153055 polypeptide=Lus10030229 locus=Lus10030229.g ID=Lus10030229.BGIv1.0 annot-version=v1.0 MRWCSLWGSFFVLLCCFGVVAAAAAVVSSSSSSLAAGMNGDDSGCLGGGVGGYGLVFASPFHSPSPSSSCSGLNTTHSAVDRPREFDFVERDPSGRYVRY DEVLGRGAFKTVYKAFDEVDGIEVAWNRVKIDDVMRSEEDLKKLYSEVHLLRSLKHESIISLYDSWVDEKKKTINMITELFTSGNLRQYRTKHKNVDMKA VKWWARQILHGLAYLHNHNPPVIHRDLKCDNIFVNGNHGEVKIGDLGLATVMQQTTARSVIGTPEFMAPELYEEQYNELVDVYSFGMCMLEMVTFEYPYS ECKNPAQIFKKVTSGIKPASLSKVRDPQVKEFIEKCLLPAPCRLSAKELLRDPFLQPKGALSPRDPLRLPKLCVPPITVPAKSPALSMELDNNLTKLSLR TCTGSNLPSPTHQPDMELRRVHRNHEFRLKGMKNEDNSVSLSMRIADSHGQVKNIHFIFYLDSDTAVAVAAEMVEQLELAAEHDVVFIAEFIDYLMMKLH PGWKPSFDCASSGAVTPFVESPVHRNSRNSSPWGSVLTCTPPESAVELLSRLSAGQCSGGEVDDHQCQHLQQFDYNSSPSLAPMDDHDSSNGSAVSEGDA EHLSSCKVNAAIFCLRGYESDGCIQGLATGSDSDFELMDTYFAYQCGKTDSNGSCESLTNLDLAFPKLSPAPAANNYRDPDMELKEELEAIEAQYRNWFQ ELARMKEKAMQATRERCLAKKKLSVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	4.2	0.8783
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	6.5	0.8752
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	11.1	0.8582
AT4G02425			unknown protein		Lus10030370 [exp]	12.0	0.8162
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	12.3	0.8288
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	13.6	0.8351
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	17.1	0.8026
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	19.6	0.8348
AT4G16490			ARM repeat superfamily protein...		Lus10017562 [exp]	20.0	0.8308
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	20.3	0.8037

Compare expression of checked genes

Lus10030229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.