Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01220 1467 / 0 AtFKGP Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005982 [exp] 1712 / 0 AT1G01220 1389 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101400 [exp] 1607 / 0 AT1G01220 1566 / 0.0 Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, L-fucokinase/GDP-L-fucose pyrophosphorylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain CL0536 [flax] [poplar] HEXAPEP PF07959 [flax] [poplar] Fucokinase L-fucokinase
Representative CDS sequence Show only first row Show all	>Lus10030230 pacid=23153135 polypeptide=Lus10030230 locus=Lus10030230.g ID=Lus10030230.BGIv1.0 annot-version=v1.0 ATGGACGGCAGAAGAAGATCCACCCAAGCCTCCTCCGCCGCGAAACACGGAGCCGACTTGACCTCCGTCCTCCGCAAATCCTGGTACCATTTGAGGCTGT CCGTCAGGCACCCTTCCAGAGTCCCTACTTGGGACGCCATCGTACTCACCGCCGCTAGTCCCGAGCAAGCCGAGCTTTATCAATGGCAGCTCAAGCGAGC CAAGCGGATGGGCCGGATCGCTTCATCCACCGTCACTCTCGCAGTGCCCGACCCGGAGGGACAGCGGATCGGATCCGGCGCCGCCACTCTCAATGCCATT CACGCCCTCGCCGAGCATTACCATCTCTTTCCGGAGGTGGCCAATTTTGGAAATGGAAGATCTGGATCTAATAAGGAAGACTCTGTTCCGACAATGGTTG ATTTCTTGGCCAAGAAGCACATACTACTGCTCCATGCTGGAGGTGACTCCAAAAGGGTACCATGGGCTAATCCTATGGGGAAAGTATTCATGCCTTTGCC TTATTTGGCTGCTGATGATCCAGATGGTCCCGTTCCACTTCTATTTGATCATATACTGGCGATTGCCTCTTGTGCTAGGCAAGCTTTCAAGAATGAAGGT GGGGTGTTGACTATGACGGGGGATGTTCTTCCATGTTTTGATGCCTTCAACTTGGTTATTCCGGAAGATGCATCCTGCATTGTTACTGTACCTATTACTC TAGATATTGCTGCCAATCACGGTGTTATTGTAGTATCCGACACAGGGGTTGTTGCTGACGATTACACAGTTGATTTGGTTGACAATCTGTTACAGAAACC TAGTCAGGAAGAACTTGTTAGAAGTCATGCAATTTTAGATGATGGGAGAGCCTTGCTGGATACTGGAATCATTGCAGTTAGAGGCAAAGCATGGCGTGAG CTTGCTTCTCTTGCAGCATCCTGCCAACCTATGATCTCAGATCTTCTGAAAACCCGAAAAGAGATGAGTTTATATGAGGATCTTGTAGCTGCATGGGTAC CTGCAAAGCATGACTGGCTGAGGGGACGCCCTCTTGGTGAAGAACTAATCAGAAGATTGGGAAAACAAAGAATGTTCAGCTGTTGTGCATATGACTTGTT GTTCCTACACTTCGGAACCTCGAGTGAAGTTTTGGATCACTTCAGCAGAGCCAGCTCGGAACTTGTTGGGCGAAGGCATTTATGTTCAATTCCAGCTACC ACTTCATCCGACATTGCTGCATCCGCTGTAATTCTCTCTAGCAAGATTGAACCTGGCGTCTCGGTTGGTGAAGATTCTCTTATATATGATTCATCCATTT CCGGGAGAATACAAATCGGTTCACTTTCAGTTGTTGTTGGGGTGAACATTCAACCAGACATCGTTGCAACGGTAATTGACTCGTTTCGATTCATGCTTCC GGATCGGCATTGTCTCTGGGAAGTTCCTTTAGTAGGATGCACGGGAAGAGTACTAGTGTACTGCGGTCTTCACGATAACCCGAAGAATTCGATTCTTGGT GATGGAACCTTTTGTGGGAAGCCATGGAGGAAACTGCTGGATGATTTAGGGATTTCGGAAACTGACCTTTGGAGCTCTTTGGGTGGCCAAGAGAAGTGTT TGTGGAATGCGAAACTATTCCCTATCGTTTCTTATTTTGAAATGCTCACACTGGCATCCTGGTTGATGGGTTTGAACGAAGATCAGCCAACTCCTAGCAG CCTACTCTCGTTGTGGAGAGGTTCGAGCCGTGTCAGTTTGGAGGAGCTGCATAGATCGATCGACTTCCCGAAAATGTGTCTCGGTTCAAGTAATCATCAA GCCGATCTTGCAGCGGGGATTGCTAAAGCTTGCATTGATCATGGCTTGCTTGGACGGAACTTGTCGCAGTTGTGTCAGGAAATTCTGCAGCAGGAAACTT CCGGGATGGTAACGTGCAAGGATTTCCTGAAATCATGTCCTGAACTGCAAAAGCAGAATTCTAAGATTCTTCCTAGAAGCCGGGCGTACCAGGTGGAAGT TGATCTTCTTCGAGCTTGCAAGGATGACACGTCCGCTTGCCAGTTGGATCACCAGGTGTGGGCTGCAGTTGCTGACGAAACTGCTTCAGCGGTCAGATAT GGTTTCCGAGAACATCTCTTGGAGTGCCCCATTACCGAACTAGCTTCCCCGAGTCACGATGGCAATATCGATCAGTCTTTCCAACCGAGAAGGGTGAAGG TCGAGTTACCCGTTCGTGTCGATTTTGTGGGAGGATGGAGCGACACTCCTCCATGGAGTTTGGAGCGAGCTGGCTGCGTTCTGAACATGGCAATAAGTTT GGAAGGCTGTCGTCCAATTGGCACCATCATAGAGACAACAGAGAAACCAGGAATTCTGATCAATGACGATGTGGGGAACGAGTTGTACGTACCGGCTCCG AATTCGATCTCGCCTCCTTTCGGAGGAGACGATCCATTCCGGCTAGTCAAATCGGCCCTACTCGTTACTGGCGTCCTCCACAAAAGATCCAACGGCTTGC ACGTAACGACATGGGCTAAGGTACCCCGCGGCAGCGGCCTAGGAACTTCCAGCATTTTAGCTGCAGCAGTTGTCAAAGGACTCCTTCAGATAACCGACGG AGACGAAAGTAACGAGAATGTAGCTCGACTCGTTCTGGTACTCGAGCAGCTCATGGGTACAGGAGGCGGTTGGCAGGACCAAATCGGTGGTTTATACCCT GCCATCAAGTTCACTACCAGCTTCCCGGGGATACCATTGCGGCTACAAGTCGTCCCTCTGCTGCCTTCTCCTCAGCTCTTGTCGGAGTTACAACAGCGAT TACTCGTGGTCTTCACCGGCCAAGTTCGTTTGGCTCATCAAGTCCTACAGAAGGTAGTAGTCAGATACCTTCGCCGAGATAACCTCCTAATATCGAGCAT CAAGAGACTGGCGGAGCTCGCCAAGACAGGGAGGGAAGCTCTGATGAACTGTGACGTGGACGAGCTTGGGGAGATCATGCTCGAAGCATGGAGGCTGCAT CAGGAACTTGATCCTTACTGCAGTAACGAATTCGTGGACGAGCTTTTCGCGTTCGCCAAGCCATACTGCTGCGGGTACAAGCTTGTGGGAGCCGGAGGAG GCGGGTTTGCCTTGTTGCTTGCGAAGGAAGCAACTTCGGCTAAGGAATTGAGGCGTAAGCTTGAAGAAGAATCGAACTTCGACGTCAAAGTCTACGACTG GAGCATCTTCTTAGAGAATTGA
AA sequence Show only first row Show all	>Lus10030230 pacid=23153135 polypeptide=Lus10030230 locus=Lus10030230.g ID=Lus10030230.BGIv1.0 annot-version=v1.0 MDGRRRSTQASSAAKHGADLTSVLRKSWYHLRLSVRHPSRVPTWDAIVLTAASPEQAELYQWQLKRAKRMGRIASSTVTLAVPDPEGQRIGSGAATLNAI HALAEHYHLFPEVANFGNGRSGSNKEDSVPTMVDFLAKKHILLLHAGGDSKRVPWANPMGKVFMPLPYLAADDPDGPVPLLFDHILAIASCARQAFKNEG GVLTMTGDVLPCFDAFNLVIPEDASCIVTVPITLDIAANHGVIVVSDTGVVADDYTVDLVDNLLQKPSQEELVRSHAILDDGRALLDTGIIAVRGKAWRE LASLAASCQPMISDLLKTRKEMSLYEDLVAAWVPAKHDWLRGRPLGEELIRRLGKQRMFSCCAYDLLFLHFGTSSEVLDHFSRASSELVGRRHLCSIPAT TSSDIAASAVILSSKIEPGVSVGEDSLIYDSSISGRIQIGSLSVVVGVNIQPDIVATVIDSFRFMLPDRHCLWEVPLVGCTGRVLVYCGLHDNPKNSILG DGTFCGKPWRKLLDDLGISETDLWSSLGGQEKCLWNAKLFPIVSYFEMLTLASWLMGLNEDQPTPSSLLSLWRGSSRVSLEELHRSIDFPKMCLGSSNHQ ADLAAGIAKACIDHGLLGRNLSQLCQEILQQETSGMVTCKDFLKSCPELQKQNSKILPRSRAYQVEVDLLRACKDDTSACQLDHQVWAAVADETASAVRY GFREHLLECPITELASPSHDGNIDQSFQPRRVKVELPVRVDFVGGWSDTPPWSLERAGCVLNMAISLEGCRPIGTIIETTEKPGILINDDVGNELYVPAP NSISPPFGGDDPFRLVKSALLVTGVLHKRSNGLHVTTWAKVPRGSGLGTSSILAAAVVKGLLQITDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYP AIKFTTSFPGIPLRLQVVPLLPSPQLLSELQQRLLVVFTGQVRLAHQVLQKVVVRYLRRDNLLISSIKRLAELAKTGREALMNCDVDELGEIMLEAWRLH QELDPYCSNEFVDELFAFAKPYCCGYKLVGAGGGGFALLLAKEATSAKELRRKLEEESNFDVKVYDWSIFLEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	0	1
AT3G58050			unknown protein		Lus10029299 [exp]	1.4	0.8862
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	5.7	0.8307
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	6.5	0.8680
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	9.6	0.8560
AT1G61850			phospholipases;galactolipases ...		Lus10007661 [exp]	11.3	0.8425
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	12.2	0.8377
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	12.7	0.8380
AT4G32640			Sec23/Sec24 protein transport ...		Lus10004122 [exp]	13.4	0.8648
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Lus10011159 [exp]	18.7	0.8004
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	21.1	0.8364

Compare expression of checked genes

Lus10030230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.