Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) AT4G00905 318 / 8e-110 NC domain-containing protein-related (.1) AT5G06370 238 / 1e-78 NC domain-containing protein-related (.1) AT3G02700 211 / 4e-68 NC domain-containing protein-related (.1) AT5G16360 193 / 2e-60 NC domain-containing protein-related (.1) AT5G16330 173 / 3e-53 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005981 [exp] 441 / 3e-158 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10029402 [exp] 248 / 2e-82 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10010962 [exp] 163 / 2e-49 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10004198 [exp] 114 / 1e-06 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 0 / 1 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101300 [exp] 386 / 5e-137 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 378 / 1e-133 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 253 / 1e-84 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 226 / 4e-74 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 221 / 8e-72 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 89 / 2e-21 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 40 / 0.0003 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF04970 [flax] [poplar] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030231 pacid=23152974 polypeptide=Lus10030231 locus=Lus10030231.g ID=Lus10030231.BGIv1.0 annot-version=v1.0 ATGGGTCTGCTGAGTCACAGAGTAGAGAGAAGCGAAATCAAGCCTGGAGATCACATCTACACTTACAGGGCTGTCTTCACCTACTCCCACCATGGTATTT ACGTTGGGGGAAGCAAAGTTGTACACTTTACACCCAGAAGAAGGAATCCAGAATCCACAGAAGACTCGGATTCCTCATCTTATGACACAATGTCCAACAT TCCATCCACCTGCAAAATCTTTCCGGACTGCGGATTCAGGCAGCAAGGCAGCGGAGTCGTCCTCACATGCCTAGACTGCTTCCTCGGCCGAGGCTCTCTC CACCTTTTCGAGTACCAGGTCCCGCCTCCCGTGTTCATGGCCAAACTCCGGGGAGGAACCTGCACCACGGCAGCTTCCGACACCCCCGAGACCGTGGTCC ACCGTGCAATGTACCTACTCCAGAACGGGTTTGGAAACTACGACGTGTTCCAGAATAACTGTGAGGACTTTGCCCTCTACTGCAGGACGGGGCTCTTGAT AACCGACAAGCAAGGGGTTGGTAGGAGCGGCCAGGCTTCGTCGGTGATTGGCGCCCCTTTGGCTGCCATCCTTTCGTCGCCTCTCAAGCTGTTAATGCCG AGTCCCGTTGGTGTTGCGACGGTGACTGCAGGTATGTACTGCATGAGCAGGTATGCTACTGACATTGGTGTTAGGAGTGACGTGGTTAAGGTTGCTGTTG AAGATTTGGCTGTGAATCTTGGTTGGGGCGGTCTTATAGAACAATTCGTGGATGCGAATGATGATGATGTTGATAAAGATTCCGGCCATATGGTTGCCCT GTGA
AA sequence Show only first row Show all	>Lus10030231 pacid=23152974 polypeptide=Lus10030231 locus=Lus10030231.g ID=Lus10030231.BGIv1.0 annot-version=v1.0 MGLLSHRVERSEIKPGDHIYTYRAVFTYSHHGIYVGGSKVVHFTPRRRNPESTEDSDSSSYDTMSNIPSTCKIFPDCGFRQQGSGVVLTCLDCFLGRGSL HLFEYQVPPPVFMAKLRGGTCTTAASDTPETVVHRAMYLLQNGFGNYDVFQNNCEDFALYCRTGLLITDKQGVGRSGQASSVIGAPLAAILSSPLKLLMP SPVGVATVTAGMYCMSRYATDIGVRSDVVKVAVEDLAVNLGWGGLIEQFVDANDDDVDKDSGHMVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01225			NC domain-containing protein-r...		Lus10030231 [exp]	0	1
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	1.4	0.8922
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10026567 [exp]	6.6	0.8880
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	8.1	0.8605
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	16.3	0.8440
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	19.5	0.8604
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	24.5	0.8240
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	28.5	0.8557
AT3G08670			unknown protein		Lus10025209 [exp]	29.7	0.8329
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	30.3	0.8439
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	30.4	0.8489

Compare expression of checked genes

Lus10030231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.