Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09880 603 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 577 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 568 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 562 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 511 / 7e-172 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 489 / 1e-163 Rhamnogalacturonate lyase family protein (.1) AT4G37950 486 / 4e-162 Rhamnogalacturonate lyase family protein (.1) AT1G01230 281 / 2e-90 ORMDL family protein (.1) AT5G42000 257 / 2e-81 ORMDL family protein (.1.2) AT1G65210 197 / 8e-58 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005979 [exp] 967 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 581 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 504 / 1e-169 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10039627 [exp] 498 / 5e-167 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 494 / 5e-167 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 487 / 2e-162 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10000684 [exp] 481 / 8e-160 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 478 / 2e-158 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 468 / 6e-155 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110100 [exp] 634 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 601 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 584 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 575 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 567 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 523 / 4e-176 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 506 / 1e-169 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 473 / 2e-157 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.014G101000 [exp] 280 / 4e-90 AT1G01230 285 / 3e-100 ORMDL family protein (.1) Potri.002G174400 [exp] 273 / 3e-87 AT1G01230 254 / 3e-88 ORMDL family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [flax] [poplar] ORMDL ORMDL family CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10030232 pacid=23153077 polypeptide=Lus10030232 locus=Lus10030232.g ID=Lus10030232.BGIv1.0 annot-version=v1.0 ATGGCGAATCTATACGTGAAGGCGGTACCTCCGGCGGATATGAACAAGAACACCGAGTGGTTCATGTACCCTGGCGTCTGGACTTCCTACATGCTCATCT TGTTCTTCGCTTGGCTCGTCGTTCTCTCCGTATCTGGTTGCTCCCCTGGCATGGCTTGGACCGTCGTCAATCTCGGTCACTTCGCTATGACTTACCATTT CTTTCACTGGAAGAAGGGAACTCCATTCGGTGATGATCAGGGGATCTATAATGGACTGACCTGGTGGGAGCAAATGGACAACGGAAAGCAGCTTACTCGC AACAGGAAGTTCCTAACTGTGGTTCCTGTGGTTCTGTACCTGATAGCTTCACACACAACCGACTACGAACATCCGATGCTGTTTATGAACACGATCGCGG TGCTAGTTCTTGTTGTGGCCAAGTTCCCGAATATGCACAAAGAAGGCCACAATCAAACAATGGAACGCCGTCGTTTTTATGGCAGCTGCGGAATTCCCTC ATCATCCTTTCTACTTCTACTACTACTCATCATGTCGTCGTCGTCGCCGGCGAGAGGATTAAATCACGGCGAGGGCCGGAGTCGGAAGCCGCCGGGGGTG GGGGTTGGACAGGAACCGTCGTCCTCGGAAGCTGTGAAGTTGCAGATTTGGGATCAATATGTGGTGATAGGTAACGGGATAGTGGAGGTTAACTTAACCA ACCCGGGTGGTCAGGTCGTCGGAGTTGGGTACAATGGCGTTGTCAATCTGCTCGAAGTTGTTAACCATGAAAATGACAGAGGGTTCATAATGATACATGG ATCGTCAGGGTTCTACACATACACCATTTACGAACATTCGCAACATCATCCGGCTTTCGAGCTCGCCAACACTCGCCTCGTCATCAAGCCAAGAAAAGAC ATATTCCATGAGATGGCGTTAAGTGACAAGAAGCATAGAGAAATGCCACTACCTGACGATAGGTTGCCTCCAAGAGGCCGCACTCTTGACTACCCTGAAG CTGTCTTGCTTGTTGACCCTATTGAGCCTCAGTTCAAAGGGCAGGTGGATGACAAGTATGAGTACTCGATGGAAAACAGAGACATCAAAGTTCATGGGTG GATGAGCAGAGAGCCATCTGTTGGGCTGTGGCAAATCACACCTAGTTCCGAGTTCAGGTCCGGCGGCCCACTCAAGCAGTTCCTTGCTTCCCATGTCGGC CCAACTAACCTTGCTGTGTTTCACAGTACACACTACACTGGGGCAGATATGATGATCCCTTTCGAAGCAAACGAACCATGGAAGAAAGTGTACGGACCTG TTTTCATCTACCTCAACTCTCTTAACCCACCAGATCACAAACAACCACAACAAGAAAAAATCACCCAGCTCTCCCTCTGGGAAGATGCCAAGAACCAGCT CGTGAACCAGTCTAAACAATGGCCCTACCAGTTCGTCAGTTCGCCAGACTACGCCCTTCCCAGCCAACGAGGTTCCGTAACAGGAAAACTCTCCGTTCTC GAACCACAAATCAGTTATGACGGCATCAACCTTCTTCCGCCACTTGGTGCGCTTGTCGGTCTAGCCGCTCCGGGCAACCCTGGCTCGTGGCAGCTCGAAT CCAAAAGATACCAATTCTGGACTGAAGTAGAAGCGGACGGGACGTTCAGGATCGACAATGTGATCGCTGGTCGGTATAATCTGTACGGATTCGTTCCGAA CTTCGTTGGGGAGTATAAGTATGATGCTCTCATTGATATAACTCCAGGTAGAACAATTGATGTTGGAGATGTTGTGTACCAGCCTCCTAGAAACGGATCA ACTCTGTGGGAGATTGGGATTCCTGATCGAACTGCAGCAGAGTTCTTCATTCCTGATGCTAATCCTGATTACATCAACCCGCTTTATCTTCGTCAGGAAA AGTACAGGCAGTATGGATTGTGGAAAAGATACGCAGAACTATACCCTGAAGCAGATTTGGTGTACAATGTCCATACTGATGACTATAAAAAAGACTGGTT CTTTGCTCAAGTTACTAGGAAGAAAGACAACAATGGAACGTATCAAGGAACAACCTGGCAGGTTAAGTTCAAGCTAGACGTAACATACCCACAGGTAAAC TACACACTAAGGGTGGCACTAGCAACGGCAAACGGTGCGGAGCTGCAGGTCCGGGTAAATGAACCGAGCACCCTAATCCCGCTGTTCACAACGGGGGAGA TCGGCAAGGACAACACGATCGCCAGGCACGGAATCCACCGGGTTTACAGGCTGTTTGATGTTACAGTTCCAGGGTCGTTGCTCGTGGAAGGAAGCAACAC GATTTTCCTGATGCAGGCGGTTGGCAAAGGACCTCTCTACGGGTTAATGTATGATTACATTCGTTTCGAAGGGCCGTTGTCGCCCAACCCGAGAGACCAG AATTGA
AA sequence Show only first row Show all	>Lus10030232 pacid=23153077 polypeptide=Lus10030232 locus=Lus10030232.g ID=Lus10030232.BGIv1.0 annot-version=v1.0 MANLYVKAVPPADMNKNTEWFMYPGVWTSYMLILFFAWLVVLSVSGCSPGMAWTVVNLGHFAMTYHFFHWKKGTPFGDDQGIYNGLTWWEQMDNGKQLTR NRKFLTVVPVVLYLIASHTTDYEHPMLFMNTIAVLVLVVAKFPNMHKEGHNQTMERRRFYGSCGIPSSSFLLLLLLIMSSSSPARGLNHGEGRSRKPPGV GVGQEPSSSEAVKLQIWDQYVVIGNGIVEVNLTNPGGQVVGVGYNGVVNLLEVVNHENDRGFIMIHGSSGFYTYTIYEHSQHHPAFELANTRLVIKPRKD IFHEMALSDKKHREMPLPDDRLPPRGRTLDYPEAVLLVDPIEPQFKGQVDDKYEYSMENRDIKVHGWMSREPSVGLWQITPSSEFRSGGPLKQFLASHVG PTNLAVFHSTHYTGADMMIPFEANEPWKKVYGPVFIYLNSLNPPDHKQPQQEKITQLSLWEDAKNQLVNQSKQWPYQFVSSPDYALPSQRGSVTGKLSVL EPQISYDGINLLPPLGALVGLAAPGNPGSWQLESKRYQFWTEVEADGTFRIDNVIAGRYNLYGFVPNFVGEYKYDALIDITPGRTIDVGDVVYQPPRNGS TLWEIGIPDRTAAEFFIPDANPDYINPLYLRQEKYRQYGLWKRYAELYPEADLVYNVHTDDYKKDWFFAQVTRKKDNNGTYQGTTWQVKFKLDVTYPQVN YTLRVALATANGAELQVRVNEPSTLIPLFTTGEIGKDNTIARHGIHRVYRLFDVTVPGSLLVEGSNTIFLMQAVGKGPLYGLMYDYIRFEGPLSPNPRDQ N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	0	1
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	1.0	0.8750
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	1.4	0.8698
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	3.2	0.8574
AT2G25605			unknown protein		Lus10008087 [exp]	6.7	0.8271
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10030424 [exp]	9.8	0.8370
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	13.2	0.8093
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	14.0	0.8272
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	14.1	0.8132
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	16.0	0.8642
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	18.3	0.8616

Compare expression of checked genes

Lus10030232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.