Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24430 777 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 745 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 732 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 697 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 655 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 638 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G37950 602 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 181 / 2e-52 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028212 [exp] 756 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 673 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 641 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10004281 [exp] 623 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 620 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 611 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 573 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005978 [exp] 568 / 0 AT4G24430 630 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10029552 [exp] 563 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110300 [exp] 839 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 831 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 785 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 758 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 740 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 657 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 654 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 598 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10030233 pacid=23152971 polypeptide=Lus10030233 locus=Lus10030233.g ID=Lus10030233.BGIv1.0 annot-version=v1.0 ATGTCCAACCTGGGTGTGAAGCTGCACATTGATAACAATCACGTGGTGCTGGATAATGGGATACTAAAGCTCACAATATCAAAGCCACAGGGAATAGTCA CTGGAATCACCTACAATGGCAGCACCAACTTGCTCGAAGTCCGAAATGATGAAATAGACAGAGGATATTGGGACCTTGTCTGGAGTAAAGAAGGGAGCAC AGGAACAAAAGGAACTCAGGAAAGAATTAGTGGGACAGAATTCAGTGTGATAGTGGAAAATGAGGGACAAGTCGAAGTCTCATTTGCAAGAACATGGGAT CCTTCCCTTGAAGGCCAGCTTCCTTCTCTTAACATAGACAAGAGGTTCATATTGCTTCGAAACTCGTCGGGATTCTACTCGTACGCGATTTTCGAGCATT TGCCTGAATGGACCCCTTTCCACCTCCCACAAGTCAGGATAGTGTTCAAGCTCAATAAAGACAAGTTCCATTACATGGCTGTGGGAGATTCCAGACAGAG ATTCATGCCATTACCAGATGACAGGCTACCAGAGAGATGCAAAGAACTTGATTTTCCTGAAGCTGTGTTACTTGTCAACCCTGTGGAACCACAATTTCAA GGAGAGGTGGACGATAAGTACCAGTATTCTTGTGAAAACAAGGATCTTAAAGTGCATGGATGGATAAGCTCGGATCCAGCAGTAGGATTCTGGCAGATCA CACCTAGCAATGAGTTCAGATCAGGTGGACTAGTGAAACAGAACCTCACATCTCATTGTGGTCCGATCAATCTCGCTATGTTTCTGAGTGCTCACTATGC TGGTGATGATATGGTCCTGAAACTCAAACCAGGGGAGGGCTGGAAGAAAGTCCTTGGTCCTGTCTTTATGTATCTCAACACGGTGGCTGCCGACGACCAC GGAGGAGGAAAGATCGACCCACTACTTTCCTTATGGGAAGATGCCAAGCAACAGAGCACCAAATATCATAAATCATACAGGTGCGGTAGTGAAACAACCG TTATGCCTGGAAATGGCGGGTATGTTGGATTAGCACCACCTGGAGAGGTAGGATCTTGGCAGACAGATGGTAAGGGGTACCAGTTTTGGAGTGAAGCAGA TGAACAAGGTAACTTCTCAATCAGTAACATCAGGCCTGGAGAATACAACCTCTATGCATGGATTCCAGGATTCATTGGAGATTACAAATATGATTCTCCT ATTACCATAGCTCCAGGGAGTGATATGGAGCTGGGAGATGTTGTGTACAAGCCTCCCAGAGATGGACCGACCCTGTGGGAGATTGGATTCCCTGACAGAT CAGCTTCAGGATTCTATGTTCCTGATGCTGATCCTGTTTATTCCAACAAGCTTTTTCTGGGCCATCCTGACAGGTTCAGGCAGTACGGATTGTGGGAAAG ATACATAGAATTGTACCCAAAGGAGGATTTGGTATACACTATTGGGAAGAGTGATTGGACCAAAGATTGGTTCTTTGCCCACATTCCCAGAAGAACAAAC GAGGGGGAGTACGAACCAACAACATGGCAGATCAAGTTCAGGTTGGACAACAAACACAATAAGAGCAGTAGTAACTATAAGCTCCGAATCGCGCTCGCCA CTGCGAACGTTGCGGAGCTAGAGGTTCGGATCAACGATCCTCCACAGATGGGGAATCCGGCGTTGTTCACGACAGGGGTGATAGGACACGACAACACGAT AGCAAGGCATGGAATCCACGGCCTCTATAGGCTGTACAGCGTTGATGTCCCGGCTTCTCTTCTTGTGCAAGATAACACATTTTACTTTACTCAGACTCAA ACCAAGTCTCCTTCTTCGGCTCCTTTCCAGGGCGCCTTCCAGGGCATTATGTATGATTATGTTCGTCTCGAATCACTGAGCGAGTAG
AA sequence Show only first row Show all	>Lus10030233 pacid=23152971 polypeptide=Lus10030233 locus=Lus10030233.g ID=Lus10030233.BGIv1.0 annot-version=v1.0 MSNLGVKLHIDNNHVVLDNGILKLTISKPQGIVTGITYNGSTNLLEVRNDEIDRGYWDLVWSKEGSTGTKGTQERISGTEFSVIVENEGQVEVSFARTWD PSLEGQLPSLNIDKRFILLRNSSGFYSYAIFEHLPEWTPFHLPQVRIVFKLNKDKFHYMAVGDSRQRFMPLPDDRLPERCKELDFPEAVLLVNPVEPQFQ GEVDDKYQYSCENKDLKVHGWISSDPAVGFWQITPSNEFRSGGLVKQNLTSHCGPINLAMFLSAHYAGDDMVLKLKPGEGWKKVLGPVFMYLNTVAADDH GGGKIDPLLSLWEDAKQQSTKYHKSYRCGSETTVMPGNGGYVGLAPPGEVGSWQTDGKGYQFWSEADEQGNFSISNIRPGEYNLYAWIPGFIGDYKYDSP ITIAPGSDMELGDVVYKPPRDGPTLWEIGFPDRSASGFYVPDADPVYSNKLFLGHPDRFRQYGLWERYIELYPKEDLVYTIGKSDWTKDWFFAHIPRRTN EGEYEPTTWQIKFRLDNKHNKSSSNYKLRIALATANVAELEVRINDPPQMGNPALFTTGVIGHDNTIARHGIHGLYRLYSVDVPASLLVQDNTFYFTQTQ TKSPSSAPFQGAFQGIMYDYVRLESLSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	0	1
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	1.0	0.9277
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	2.0	0.8958
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10005978 [exp]	2.4	0.8927
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	2.8	0.8300
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	9.2	0.8107
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	9.6	0.8567
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	10.2	0.8011
AT3G07510			unknown protein		Lus10025856 [exp]	15.8	0.7715
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	19.7	0.8516
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	20.8	0.8287

Compare expression of checked genes

Lus10030233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.