Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46580 276 / 2e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT5G49970 42 / 0.0002 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005977 [exp] 394 / 6e-142 AT2G46580 274 / 1e-94 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10000833 [exp] 45 / 1e-05 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10002098 [exp] 45 / 1e-05 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100700 [exp] 308 / 4e-108 AT2G46580 295 / 4e-103 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.002G173800 [exp] 303 / 2e-106 AT2G46580 293 / 2e-102 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.002G102600 [exp] 44 / 5e-05 AT5G49970 761 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence Show only first row Show all	>Lus10030234 pacid=23153042 polypeptide=Lus10030234 locus=Lus10030234.g ID=Lus10030234.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCATGGAAGCAGCTTCTCCTAACAGCGTTAGAGTCCAACGCACACCTCAAGCACACTTCCTATCTTCAGCTCGCGACAATTGGATGCAACG GAAGACCTTCGAATCGCACCGTGGTTTTCAGAGGATTTGAAGATAACAGTGATAAAATTCTAATCAACACCGATTCCCGGACTCGCAAGATTGAAGAACT CCAGCGTTGTTCCTACGCAGAGATATGCTGGTACTTCACCGACTCTTGGGAGCAATTCCGGATCGATGGAAAAGTTGATATAATTGATGGTTCCAATCCT GATCCTGCAAAAATCCAGCAGCGGGAGAAATCCTGGTATGCAAGTTCTGCGAGATCAAGAATGCAATACATGGGACCGAATCCAGGTCTTCCAGCTTTAA GCGACCAGACTCACCAACAAGAATCCTTCCTGGATTCTTCTGCTGGGCCAGTTGCTGCATTCTGTCTTCTGGTTTTGGAGCCTGATCAGGTTGATTACTT GAATTTGAAGAGCAGTGAGAGATTAATGTTTACCTCGGGCCAAGGTGTTAATGGCGAGAAGAATTGGAATTCCGAGAGGGTGAACCCGTGA
AA sequence Show only first row Show all	>Lus10030234 pacid=23153042 polypeptide=Lus10030234 locus=Lus10030234.g ID=Lus10030234.BGIv1.0 annot-version=v1.0 MAAPWKQLLLTALESNAHLKHTSYLQLATIGCNGRPSNRTVVFRGFEDNSDKILINTDSRTRKIEELQRCSYAEICWYFTDSWEQFRIDGKVDIIDGSNP DPAKIQQREKSWYASSARSRMQYMGPNPGLPALSDQTHQQESFLDSSAGPVAAFCLLVLEPDQVDYLNLKSSERLMFTSGQGVNGEKNWNSERVNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10030234 [exp]	0	1
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	4.8	0.8091
					Lus10021186 [exp]	7.5	0.7423
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10016402 [exp]	11.5	0.7440
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	12.6	0.8065
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10010983 [exp]	13.2	0.7894
AT5G46030			unknown protein		Lus10025438 [exp]	15.0	0.7778
AT1G67000			Protein kinase superfamily pro...		Lus10026761 [exp]	16.4	0.7223
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	20.8	0.7275
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	20.9	0.7584
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	21.6	0.7251

Compare expression of checked genes

Lus10030234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.