Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46550 167 / 3e-47 unknown protein AT1G01240 83 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005973 [exp] 624 / 0 AT2G46550 269 / 2e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100300 [exp] 288 / 7e-93 AT2G46550 213 / 2e-64 unknown protein Potri.002G173200 [exp] 256 / 3e-81 AT2G46550 180 / 2e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030237 pacid=23153085 polypeptide=Lus10030237 locus=Lus10030237.g ID=Lus10030237.BGIv1.0 annot-version=v1.0 ATGGCAGCAGCTGAAGCAAGGGCTGTTTGGCAGAGAGCAGCTAATCGTTGTTTTGTTCAAGAGGATGCCAAGAGAGCTCCCAAGTTAGCTTGTTGCCAAT CCTCATCATCATCATCATCAAAAGAAGGACCAACTGGTGGTGGGTCAGCAGAAGCAGCTCCAACTGATCATTCTTTACCAGGTTTCATGCCGGTCAACCG GAGCCCTTCATACTCGAATCTCCCACCTGATACAAGATGGTGGCTTCAGCTCCAGCCTTGTTATGGCTACCAAAAGGGCTTAACTTCCGACCAGTTGAAT GACTTAGAGGCTGAGATGGAGATTCTGAGATCGGAGGTTGGTAACTCCGACTCCAAACACTATTCGTTAGATACTAACTCGGATAGTAGTAGTACTTGGA TTGATGTCAAGAAGAGTTCCGAGTCGTCCCTTGATAAATCATCCATGGAGGTTGTTGAGGATTCACTTGGTGAAATTTTGCTACCAATTAAGAGCAATGT GAGCAGTTTTGATGAGGTGGAATCTCCTTGGACTGGTGCCGGGAAGAATGTGCCGTGGTGGCGAATGGCTGATAAGGATGATTTGGCGTCTTTAGTTGCG CAGAAGTCGTTGGATTATATGGAGAACTGTGATCTCCCTCCTCCTAGGAAAATGCAGATCAAAGGGTATGATGGTTCATTGGCTCATTCCTTGGACTGGA AGAAACCTATCGGATGTGTCTCCGATCCACAACGAATGATTAGAGAAGGCGGTATTGATGTTGTCGGAGGAAGACAAAGTCATTCATCGGGTTCTTCCGA CAAGTCATTCAGTCCCTCAACGACGATTAGGGATGTAGGCCAAGATCCAGAAACCGACCCTAGCAAGGCTCAGCTTCTCGAAGCGTTGTGTCATTCTCAA ACACGAGCAAGGGAAGCCGAGAAGGCTGCGAAGCAAGCCTGTGCCGAAAAGGAGCATGTCATTATGCTCTTCTTCAAACAGGCTTCGCAGCTCTTCGCAT ACAAGCAATGGTTCCAGCTCCTGCAGCTCGAAACCATCTACCACGGTTTGAAGAACAACAGAGAGGAGCTGACCTCCACCCTATTCCCCGTTGCCCTCCC GTGGATGCCTCCGAAAGGAAGTAAGAAACTGCGCAAGAAGAAGTCTGCGAAAGGCAGTAAGCGAGGGAAGAGGCAGGACGCTGTTGGTAAGTATGCCGTT GCATTTGCTTTGGGGTTGGGTTTGGTTGGTACAGGGTTGCTTCTTGGATGGACTGTAGGGTGGATGCTGCCATTCTAG
AA sequence Show only first row Show all	>Lus10030237 pacid=23153085 polypeptide=Lus10030237 locus=Lus10030237.g ID=Lus10030237.BGIv1.0 annot-version=v1.0 MAAAEARAVWQRAANRCFVQEDAKRAPKLACCQSSSSSSSKEGPTGGGSAEAAPTDHSLPGFMPVNRSPSYSNLPPDTRWWLQLQPCYGYQKGLTSDQLN DLEAEMEILRSEVGNSDSKHYSLDTNSDSSSTWIDVKKSSESSLDKSSMEVVEDSLGEILLPIKSNVSSFDEVESPWTGAGKNVPWWRMADKDDLASLVA QKSLDYMENCDLPPPRKMQIKGYDGSLAHSLDWKKPIGCVSDPQRMIREGGIDVVGGRQSHSSGSSDKSFSPSTTIRDVGQDPETDPSKAQLLEALCHSQ TRAREAEKAAKQACAEKEHVIMLFFKQASQLFAYKQWFQLLQLETIYHGLKNNREELTSTLFPVALPWMPPKGSKKLRKKKSAKGSKRGKRQDAVGKYAV AFALGLGLVGTGLLLGWTVGWMLPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46550			unknown protein		Lus10030237 [exp]	0	1
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	4.2	0.7891
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	4.7	0.8364
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	4.9	0.8311
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10038968 [exp]	6.2	0.8124
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	13.3	0.7964
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	14.4	0.8097
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	17.3	0.8030
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	20.5	0.7885
AT2G15695			Protein of unknown function DU...		Lus10014042 [exp]	20.7	0.8054
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	21.5	0.7713

Compare expression of checked genes

Lus10030237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.