Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61840 42 / 0.0001 Protein of unknown function (DUF688) (.1) AT4G00950 42 / 0.0002 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005972 [exp] 345 / 3e-121 AT4G00950 62 / 2e-11 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10010114 [exp] 48 / 3e-06 AT4G10810 63 / 5e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172900 [exp] 76 / 2e-16 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.014G100200 [exp] 67 / 5e-13 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.012G016700 [exp] 44 / 3e-05 AT4G27810 87 / 1e-21 unknown protein Potri.015G011900 [exp] 40 / 0.0006 AT4G27810 97 / 3e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10030238 pacid=23153034 polypeptide=Lus10030238 locus=Lus10030238.g ID=Lus10030238.BGIv1.0 annot-version=v1.0 ATGGCAGAACAAGAAGACCAAGAAGTAGAAGAAAGAACACCAAGACTGCAACTTTTCAGCAGCCCACATTCCATGAGAATGCAACAGCAAGAACAAAAAC ATCTCCTCCAGTCTTCTTCACCACTCCACACATCAGCAGCTTCTGTGCCCTTCAGATGGGAACAACATCCTGGGAAACCAATTCATGATAATGATGATCT TGATGATGTTCATTTACTAGATTTTGAGCCCAAAAAGAAGAGCTTGGATCTCCCACCAAGGATGCTGGTCATGGAGGAAGCAGACAGGTCAAAGCTCCAG TCTTCATCTTTTAGGGTGATGAAGAGGGATTGGCAGCTGGGTACTCCTTCTTTCAGGAGGACTGAAAGCAGCCTTGATGGCAGAAGAGGGGTTTTCAGTT CTTTGAAGGTTTTGTTCAAAGGTGGTCATAATGATGTAAGCAGTAATAATGGTGGTGGTGGGAGAGAAGTCGGGGGAAGTTACAGTAGCTATGTGTTTCC AGCTTATTTGGATGGTGGTGGGTGTAGTAATCTGAGTTATGATGAGGAAGAAGGGAGATGTAAGGAGGTTAAAGTGGTGGCATCAACAACTACAACTACA GAGATTAGCAGATCCGGAATCTTTTCTACTGCTACAAAGTCTCATCATTTCTGGGCAACCATTTATGAAGGGTTGAAGCAAGTGGTACCATGGAGGAGGA AAAATGGGAAGAAGAGTAAAGACAGAGCAGGGCTCCTCCCATGA
AA sequence Show only first row Show all	>Lus10030238 pacid=23153034 polypeptide=Lus10030238 locus=Lus10030238.g ID=Lus10030238.BGIv1.0 annot-version=v1.0 MAEQEDQEVEERTPRLQLFSSPHSMRMQQQEQKHLLQSSSPLHTSAASVPFRWEQHPGKPIHDNDDLDDVHLLDFEPKKKSLDLPPRMLVMEEADRSKLQ SSSFRVMKRDWQLGTPSFRRTESSLDGRRGVFSSLKVLFKGGHNDVSSNNGGGGREVGGSYSSYVFPAYLDGGGCSNLSYDEEEGRCKEVKVVASTTTTT EISRSGIFSTATKSHHFWATIYEGLKQVVPWRRKNGKKSKDRAGLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	0	1
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	4.2	0.7192
AT1G65295			unknown protein		Lus10026997 [exp]	4.9	0.7525
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	6.2	0.7491
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10021204 [exp]	6.7	0.6716
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	6.9	0.7379
AT3G13677			unknown protein		Lus10036992 [exp]	9.4	0.6399
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	13.3	0.7446
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10028200 [exp]	15.6	0.7139
AT4G19550			zinc ion binding;transcription...		Lus10006630 [exp]	16.1	0.7346
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	17.9	0.7299

Compare expression of checked genes

Lus10030238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.