Plant FIBer expression Database

Lus10030239 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53200 217 / 3e-62 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011648
[exp]
552 / 0 AT1G53200 216 / 7e-62 unknown protein
Lus10005971
[exp]
320 / 2e-105 AT1G53200 66 / 4e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G106300
[exp]
479 / 6e-162 AT1G53200 302 / 1e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10030239 pacid=23153142 polypeptide=Lus10030239 locus=Lus10030239.g ID=Lus10030239.BGIv1.0 annot-version=v1.0
ATGATGGACGAAGACAGTCAAGCGGTGGCCTTATACGGACAGGAAAACGCCGTTGTCGAATCAAGGAAACGGAAAAGGGATTCGAGCAGAGCCGGCGACG
ACGATAGTCAGGTTAAAATTGCGGAAAGGCTTTACAAAAGAGTATTATTGTCATTGGGGAAGCCATCCTATGTTCTTGGACTAACCTCAGGCAAATTGCG
ACCTGAAAATCGAATCAGACTCAGAACTCTTTTGAGGAAGCTTGTGAGACTCCATGATTGGAAAGCAGCAGCTGGAGTACTGACTGTACTTTTAAGAGAC
GGACAGAAACAGAGTTCTCCTGCCATGTATCGGTTCAAATACTGGGTTTTCCTGAACTTGCTTCAACATATGGAAGGTGATAATCTTCGAGCTAGCAACA
GCATCTTTGAAGCTTGGAAGGCAAGGATAGGAATCATCTTGTCCGAAAGTCATAGAATGAGGAGTGGTTCTATGCATGAGGATCGGTTTGTTGTCCGACT
GGAGTCTATCCTTTTCCATTTTATGCAAGGGGATGTCCAGGGGCAGCTCCAGGATGTTAGAAGCCTAATGCAGGAGCACGAATTCGAGAGTCATCCAATG
TTCAACACTATCATTGGCCTGTTTTTTTATCAGCTGTGGTACTCCGGCATTCCGGAAGGCATGAAATTGAAGCATTTCAACCAAGGGCATCATGATATCC
CTTCGGACATGGAAGTGGACCATTCACGTTCAGATGGATCAGCTTCAGGGCTTGAGGATTGTAATGCTGGTGACAACTCTGAAGGAAATAATTCGGTGTT
CAGTGACGAAACTAAATCTCTTATATGTGGCTCCGAGACATCGGTCATGAAAAGTAAAGCTGTCTTGGACCGTAATAGCATGGATTCACATAAAGAAAAT
GTCCACGTAGAAGAGTTCCAGCCTAGAGGCTTTTATGCTAATTCAGCTGACGAGGCTTCGTATGATCAGGCTGATGATGTTTACTCTATGCAAGGCTTAC
CTATCCTTGGGAACTTGGATCTTTGGTTAAGGCCGATACATTTTGATAATTGTGAGCTGGAGAAAATAATCCAGACTGATGAATACAATAACGCGGTGAC
GTATTTGTCAAGAGCTGCATCCGCGACACCCCCTGTTCTTGCTGTCTTGCTTCCTTTAGTTCAGTTATTGCTGATCAAATATGACTGGAAAGAGGCCCTT
AATCAGCTAGACAATTTCTGTGCTAATTCAAGTGCCTCGCTTCCCCGAAGATTGAAATCTTGTCTCCTGGAGCGTATCGATCCAGACAATGGCGACTTAC
TTTCACGATGTTACGAGGATGCATTGAAGAGTGATCCTACATGTAGCCAGTCCCTGGCAGGGCTTATGAGCCTTCATGAGCAAGGAATATATAACTCAGA
CGCCCTGTTAGAAATGATAGCTATGCATTTAGACGCTGCTGCGGACGTGGCAGAAACCAATGTGTGGAGAGAGTTCGCTTTATGCTTTCTCAGAGTATCT
CAACAGGAAGAGGATCGAATGTCCGGATGTCTATACATAAGCGGCAATGATAGCGAGACACAAAGACGACAACGAAATTCCGCCTGTTACAGTAAGGTTC
CGAGTTTCCTCATTCACGGGGCGTCCGGGAAGTCGTGGAAGCTGCGATGTAGATGGTGGAAGAATCTCCACTTCAGCAAGAGCTTGTCGGAAGCAGATAT
CACGGCAGGTGATTTGCATCGCTTAGCGTATAAAGCGGCATGCGCGGCTCATATGTACGGGAAGGAGGCTCGATATGTTGCGGAAGCGTTCCGGTGTATA
GAGAAAGAGAGCAGTGATAGGGAGTTAACTATATTTTTGAAAGAACACATGCGAGGTTGCATATCATTTAATCAGCATTTTCAACAGGCAACTTGA
AA sequence
>Lus10030239 pacid=23153142 polypeptide=Lus10030239 locus=Lus10030239.g ID=Lus10030239.BGIv1.0 annot-version=v1.0
MMDEDSQAVALYGQENAVVESRKRKRDSSRAGDDDSQVKIAERLYKRVLLSLGKPSYVLGLTSGKLRPENRIRLRTLLRKLVRLHDWKAAAGVLTVLLRD
GQKQSSPAMYRFKYWVFLNLLQHMEGDNLRASNSIFEAWKARIGIILSESHRMRSGSMHEDRFVVRLESILFHFMQGDVQGQLQDVRSLMQEHEFESHPM
FNTIIGLFFYQLWYSGIPEGMKLKHFNQGHHDIPSDMEVDHSRSDGSASGLEDCNAGDNSEGNNSVFSDETKSLICGSETSVMKSKAVLDRNSMDSHKEN
VHVEEFQPRGFYANSADEASYDQADDVYSMQGLPILGNLDLWLRPIHFDNCELEKIIQTDEYNNAVTYLSRAASATPPVLAVLLPLVQLLLIKYDWKEAL
NQLDNFCANSSASLPRRLKSCLLERIDPDNGDLLSRCYEDALKSDPTCSQSLAGLMSLHEQGIYNSDALLEMIAMHLDAAADVAETNVWREFALCFLRVS
QQEEDRMSGCLYISGNDSETQRRQRNSACYSKVPSFLIHGASGKSWKLRCRWWKNLHFSKSLSEADITAGDLHRLAYKAACAAHMYGKEARYVAEAFRCI
EKESSDRELTIFLKEHMRGCISFNQHFQQAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53200 unknown protein Lus10030239
[exp]
0 1
AT1G43860 sequence-specific DNA binding ... Lus10042780
[exp]
4.1 0.8989
AT2G16860 GCIP-interacting family protei... Lus10027466
[exp]
5.3 0.8498
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Lus10016578
[exp]
6.6 0.8775
AT5G15020 SNL2 SIN3-like 2 (.1.2) Lus10014505
[exp]
8.2 0.8891
AT5G50950 FUM2 FUMARASE 2 (.1.2.3) Lus10032296
[exp]
8.3 0.8793
AT2G41760 unknown protein Lus10007544
[exp]
9.8 0.8172
Lus10032698
[exp]
14.7 0.8412
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Lus10043172
[exp]
15.9 0.8205
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Lus10037417
[exp]
17.8 0.8667
AT3G19184 B3 AP2/B3-like transcriptional fa... Lus10031022
[exp]
19.9 0.8196

Lus10030239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.