Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61830 375 / 2e-124 ARF ARF18 auxin response factor 18 (.1) AT2G46530 371 / 6e-123 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 350 / 2e-114 ARF ARF9 auxin response factor 9 (.1.2) AT1G59750 348 / 5e-113 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 337 / 6e-107 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G34410 293 / 1e-92 ARF ARF21 auxin response factor 21 (.1) AT1G34310 289 / 3e-91 ARF ARF12 auxin response factor 12 (.1) AT1G35540 286 / 9e-90 ARF ARF14 auxin response factor 14 (.1) AT1G34390 280 / 9e-88 ARF ARF22 auxin response factor 22 (.1) AT1G35520 280 / 1e-87 ARF ARF15 auxin response factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041340 [exp] 482 / 7e-168 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10023058 [exp] 378 / 1e-124 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007440 [exp] 369 / 4e-121 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 364 / 5e-119 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032413 [exp] 327 / 1e-109 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10032541 [exp] 332 / 3e-105 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 330 / 2e-104 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10010969 [exp] 276 / 4e-84 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 275 / 5e-84 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100100 [exp] 386 / 1e-127 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 386 / 2e-127 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 378 / 3e-124 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 373 / 2e-122 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 362 / 2e-118 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 360 / 9e-118 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.012G106100 [exp] 333 / 2e-105 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 323 / 1e-101 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 317 / 3e-100 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 306 / 7e-96 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10030240 pacid=23153036 polypeptide=Lus10030240 locus=Lus10030240.g ID=Lus10030240.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTAGTGTTCCAGCTGCTTCATCTCCCTCAAGGGGCAAGAAGAATGATGCTCTGCTTGATGAGCTCTGGAACGCGTGTGCTAGAACAACAC ATGGTGTCCCGAAAGAAGAAGAAATGGTTTACTATTTTCCCCAGGGACACATGGAACAACTGCAAGGGACGATGAACATGCAACCCGACCAACGAATCCC TCTCTACGAACTCCCCTGCAAAATCCTCTGTCAAGTCGTCAACGTCTCCAGAATGATTGAAGAGGATACTGACGAGGTATATGCTCAGATCACCCTCCAA GCAATCAAGCAAACCGAAATAACCAATCCGGTTCCTAACCCGCCCGAGAAGCCAAGGCCAAGGGTTCACTCATTCTCTAAGATTCTCACTGTTTCTGATA CCAGCACCCATGGAGGGTTATCAGTTCCGAGGAAATATGCTACTGAATCTCTTCCACCCCTGGACTTGAGTCAGGCTACACCGAGTCAGGAATTAGTTAC CAAAGACTTCCACGGGCATGAATGGCGGTTCAAACATATTTTCAGGGGCGAACCTCCTAGGCATTTGATAAGTACAGGGTGGAGCAAGTTTGTCAATGGG AAGAAGCTGGCTGCTAGTGATGAATTTGTATTCGTGAGAGGTGAGGATGATAGATTGCTTGTTGGTGTTCGTCGTTCTTCCCGGAAGAAACTCCCCGTGG CATCTCCAGTTCTATCCCCACAGAGCTTGAATTTAGCTGTTGTTGCTACTGCTCGTCATGCTATCAACGGACTGAGCATCTTTTCGGTCTACTACAAGCC TAGTGCAAGTTCATTTATAATTGGGGTGAACAAGTGCCTGAAAGCAATGGGCCATGCCTTTCATGTAGGCATGCACGTACAGACCAACGAATATGGAGAA TATTTGGGTTATACCGGCACCATCGTTGAGGTTGGAGATTTCTCTTCGCAATGGCCAGGGTCGCAGTGGCGGTCACTCAAGGTGCAATGGGACGAACCTT CAGGAGTTGAGAGACTTCCTGAAAGGGTTTCACCATGGGAGGTGGAGCCTCTTGGGGATCCGCCTTATCATAGTGTTCCTCTTCTTGCTGGAAACAAAAG GATGAGATCACCCCAGGGTTCTGATGCAGTCAGTTCCTCTGATGCTGCTAGGGTACACAATGAGAGTAATTTGGGAGGAAACATTCGTAAATCATCGCTG CCTCATCTGAATGCACCTCTTAAGTTGTTCCCGGATCTCGCTGAGAGCAGCAAAGCTGTCTTATGGCGCTCCTTGTACTCGGGCCCCGTCCCTCCTGATA ATTCATCAGGAAGGAGCAATGGCCAGAAGGACAAGCAGAAAGTTAATGAAAACCCTTCGAACTTTCGGTTATTCGGATTCGATATAACTGGCAACGACAC CAATGCTAGCAATGCTCCCACCACTCACTCACACTAA
AA sequence Show only first row Show all	>Lus10030240 pacid=23153036 polypeptide=Lus10030240 locus=Lus10030240.g ID=Lus10030240.BGIv1.0 annot-version=v1.0 MASASVPAASSPSRGKKNDALLDELWNACARTTHGVPKEEEMVYYFPQGHMEQLQGTMNMQPDQRIPLYELPCKILCQVVNVSRMIEEDTDEVYAQITLQ AIKQTEITNPVPNPPEKPRPRVHSFSKILTVSDTSTHGGLSVPRKYATESLPPLDLSQATPSQELVTKDFHGHEWRFKHIFRGEPPRHLISTGWSKFVNG KKLAASDEFVFVRGEDDRLLVGVRRSSRKKLPVASPVLSPQSLNLAVVATARHAINGLSIFSVYYKPSASSFIIGVNKCLKAMGHAFHVGMHVQTNEYGE YLGYTGTIVEVGDFSSQWPGSQWRSLKVQWDEPSGVERLPERVSPWEVEPLGDPPYHSVPLLAGNKRMRSPQGSDAVSSSDAARVHNESNLGGNIRKSSL PHLNAPLKLFPDLAESSKAVLWRSLYSGPVPPDNSSGRSNGQKDKQKVNENPSNFRLFGFDITGNDTNASNAPTTHSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46530	ARF	ARF11	auxin response factor 11 (.1.2...		Lus10030240 [exp]	0	1
					Lus10000351 [exp]	3.2	1.0000
					Lus10002886 [exp]	4.5	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	5.5	1.0000
					Lus10014748 [exp]	6.3	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	7.1	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	7.7	1.0000
					Lus10023108 [exp]	8.4	1.0000
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	8.9	1.0000
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Lus10031865 [exp]	9.5	1.0000
					Lus10024321 [exp]	9.5	1.0000

Compare expression of checked genes

Lus10030240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.