Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 1363 / 0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G59020 57 / 5e-08 ARM repeat superfamily protein (.1.2) AT2G31660 44 / 0.0006 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005968 [exp] 1404 / 0 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 520 / 6e-176 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030423 [exp] 457 / 2e-151 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026635 [exp] 422 / 4e-135 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 298 / 9e-95 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030433 [exp] 262 / 1e-79 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10025509 [exp] 64 / 5e-10 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026726 [exp] 63 / 1e-09 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 1449 / 0 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 1425 / 0 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G232600 [exp] 57 / 5e-08 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G149600 [exp] 57 / 5e-08 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08506 [flax] [poplar] Cse1 Cse1 CL0020 [flax] [poplar] TPR PF03378 [flax] [poplar] CAS_CSE1 CAS/CSE protein, C-terminus CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030241 pacid=23153177 polypeptide=Lus10030241 locus=Lus10030241.g ID=Lus10030241.BGIv1.0 annot-version=v1.0 ATGGATTTGAACCCCAATTTCCTCGCCCAGTGCTTCCTCGATACACTCTCCCTTGCTCGGGAGACCCGCAGGGCCGGCGAGGACCGCCTCCAAGCAGCCG CGAACGCTCCCAACTACGCTCTCGCCGTTCTTAATTTGGTCGGTACGCCGACCGTCGACAACCAGATCCTTTGCGCGGCGGCTGTCAACTTCAAGAACCA CCTCCGCCAGCGATGGGCGCCGGGACAGGATTCCGACTTCAATCCGATCGCTGACGACGAGAAGAACCAGATCAAAAACCTAATCGTCTCTCTCATGCTG TCGTCGTCTCCTCAGATCCAGTCGCAGCTCAGTGAAGCCCTTTCTCTGATCGGTAAACACGATTTCCCCAAACTGTGGCCATCTTTGCTCCCTGAGCTCG TCGCCAATCTCCAGGCTGCATCGCAGGCCAACAATTACGGTACTGTCAATGGTATTCTCGAGACGGCTAACTCGATATTTAAGAAGTTCCGGTATCAGTA TAAGAGTAACGAGCTTTTCCTTGAATTGAAGTATTGTCTTGATAACTTTGCTGCTCCGTTGCTTGAAATGTTCCGTAGAACTGCCGCACTTATAGACTCT GCAGTTAGCTCTGGGTTCGAGACTTTAAAGCCCTTGTTCGAGTCTCAGAGGTTGTGTTGTAGGATCTTCTACTCTTTGAATTTTCAGGAATTGCCCGAGT TCTTTGAGGATCATATAGATGAATGGATGGCAGAGTTTAAAAAGTACTTGACTTCAAATTATCCTGCAATGGAGAGTAGTGGCCCTGGACTTACTGTCGC AGATGACCTCAGAGCTGCTGTTTGTGAGAATATTAGTCTTTACATGGAGAAGAACGAGGAAGAGTTCCAACCCTTCTTGAATGATTTTGCACATGCTGTT TGGAGTCTGTTGGTCAATGTGTCTCAGAATGCTAGCCGTGATAGGTTGGCTGTTACTGCTATTAAATTCTTAACTACAGTGAGTACCAGTGTGCATCACA GTTTGTTTAGTGAGGATGGTATAATACTGCAGATATGTCAGAATATTGTGATTCCTAATGTTCGTTTGAGAGATGATGATGAGGAGCTGTTTGAGATGAA TTACATCGAGTATATCAGGAGGGATATGGAGGGTAGTGATCATGACACGAGGAGGAGGATTGCTTGTGAGTTGCTGAAGGGGATTGCAACAAATTATAAG CAGCAAGTAACTACTATAGTTTCTGCTCAGGTACAAAATTTGTTGAATTCTTATGCAACTAATCCGGAAGCAAATTGGAAGGACAAGGACTGTGCAATAT ATCTTGTGGTGTCCCTTGCCAGCAAGAAATCAGGAGGCGTTGATGTTTCAACTGATATAGTTGATGTTCAAAGCTTCTTTGCTTCAGTCATAGTGCCTGA GTTACAAAGCCAGGATGTTAACTCATGTCCGATGCTCAAATCTGGTGCTCTTAAGTTCTTCACAATGTTCAGACATCAGATACCGAAGCATCTTGCAATT CATTATCTTCCAGATTTGGCGCGGTTCCTTGGTGCAGAGTCAAACGTAGTACATTCTTATGCTGCCAGTTGTATAGAGAAACTGCTGCTGGTTAAAGATG ATGGAGCATCGGCAAGGTATACTGCATCAGATTTGGCTCCATTTGTTCTGGTGCTGATGAACAACCTATTTAATGCATTGAAGTTTGCAGAATCCGAGGA GAATCAGTACATCATGAAGTGTATCATGCGTGTAATAGGGGTAGCAGAAATAAATGGTGATATTGCCGGTCCTTGCAGTATTGGGTTGACATCAATCCTC AATATAGTTTGCAAAAACCCCAAAAATCCTGTTTTCAACCACTATCTGTTTGAGTCGGTAGCTGTTCTTCTGAGGCGTGCATGTGACAGGGATAGAGCTC TCATACCACTTTTTGAAGATAGATTATTCCCCAGTCTCCAGTTGATCTTGGCGAATGATGTGACTGAATTTTTGCCGTATGCTTTTCAGCTCTTGGCCCA ACTGGTCGAGTTGAATCAGCCGCCTATTCGTCCTATTTACATGCAGATCTTTATGCTCCTCCTCTCTCCTGAATCATGGAATACAAGTTCAAATGTTCCT GCCCTTGTACGCTTACTGCAGGCCTTTCTTCAGAAAGCACCACATGAGCTCAACCAAGAGGGGCGCCTTAGCCAGGTGCTTGGTATATTCGACCGGCTTA TATCATCTTCAAGCTCCGAGGAACAGGGCTTCCATCTTTTAAACACTGTTATTGAGAATCTTGAATTTGCCGTCATCTCCCCCTACATGGTTCACATCTG GGCTGCCCTATTCACCCGTTTGAAGAAGAAAGAGACAGTCAAGTTTGTGAAGTCTCTTGTGATTTTCATGTCACTGTTTCTGATCAAGCACGGTTCTGGA AACCTCATCGATACAATGAACTCAGTTCAAGCAAACATATTCATGACGAGCCTGGAAAAGTTCTGGATACCGAAAGTCAAGCTGATTACCGGACACATTG AGCTCAAGTTAGTTGCTGTTGCATCGTGCAGACTTATCTGCGAGTCTCCTGCTCTTTTGGACCCGGCAGCTGCTAGTCATTGGGGGAAAATGCTGGACAG CATCGTCACTCTCCTCTCAAAGCCAGAGGAGCATCGAGTCGATGAGGAACCTGAAATTCCTGATATTTCTGAAACTGGCTATACCGCAACGTTTGTCAAT CTTTACAATGCTGGAAAGAAAGAGGATGATCCGTTGAAGGACATAAGAGATCCAAAGCAGTTCCTTGTGACTTCATTGGCAAGGCTCTCTGCTGCGTCTC CTGGGAGGTTTCCACAAATAATCAATCAGAATTTGGATTCAGCGAATCAAACAGCACTTCTCCAGCTTTGCAACACTTACAAGTGCTCAATTGTTTAG
AA sequence Show only first row Show all	>Lus10030241 pacid=23153177 polypeptide=Lus10030241 locus=Lus10030241.g ID=Lus10030241.BGIv1.0 annot-version=v1.0 MDLNPNFLAQCFLDTLSLARETRRAGEDRLQAAANAPNYALAVLNLVGTPTVDNQILCAAAVNFKNHLRQRWAPGQDSDFNPIADDEKNQIKNLIVSLML SSSPQIQSQLSEALSLIGKHDFPKLWPSLLPELVANLQAASQANNYGTVNGILETANSIFKKFRYQYKSNELFLELKYCLDNFAAPLLEMFRRTAALIDS AVSSGFETLKPLFESQRLCCRIFYSLNFQELPEFFEDHIDEWMAEFKKYLTSNYPAMESSGPGLTVADDLRAAVCENISLYMEKNEEEFQPFLNDFAHAV WSLLVNVSQNASRDRLAVTAIKFLTTVSTSVHHSLFSEDGIILQICQNIVIPNVRLRDDDEELFEMNYIEYIRRDMEGSDHDTRRRIACELLKGIATNYK QQVTTIVSAQVQNLLNSYATNPEANWKDKDCAIYLVVSLASKKSGGVDVSTDIVDVQSFFASVIVPELQSQDVNSCPMLKSGALKFFTMFRHQIPKHLAI HYLPDLARFLGAESNVVHSYAASCIEKLLLVKDDGASARYTASDLAPFVLVLMNNLFNALKFAESEENQYIMKCIMRVIGVAEINGDIAGPCSIGLTSIL NIVCKNPKNPVFNHYLFESVAVLLRRACDRDRALIPLFEDRLFPSLQLILANDVTEFLPYAFQLLAQLVELNQPPIRPIYMQIFMLLLSPESWNTSSNVP ALVRLLQAFLQKAPHELNQEGRLSQVLGIFDRLISSSSSEEQGFHLLNTVIENLEFAVISPYMVHIWAALFTRLKKKETVKFVKSLVIFMSLFLIKHGSG NLIDTMNSVQANIFMTSLEKFWIPKVKLITGHIELKLVAVASCRLICESPALLDPAAASHWGKMLDSIVTLLSKPEEHRVDEEPEIPDISETGYTATFVN LYNAGKKEDDPLKDIRDPKQFLVTSLARLSAASPGRFPQIINQNLDSANQTALLQLCNTYKCSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	0	1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	2.4	0.9279
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	3.2	0.9281
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	3.6	0.9099
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	4.0	0.9210
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	4.1	0.9059
AT1G73930			unknown protein		Lus10032474 [exp]	5.3	0.9098
AT1G73180			Eukaryotic translation initiat...		Lus10004803 [exp]	6.3	0.9127
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	6.7	0.9130
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	6.9	0.9087
AT5G65950			unknown protein		Lus10037422 [exp]	6.9	0.9226

Compare expression of checked genes

Lus10030241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.