Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 237 / 1e-74 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 147 / 1e-38 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003997 [exp] 592 / 0 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10023253 [exp] 257 / 2e-82 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 223 / 1e-69 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 204 / 2e-63 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 167 / 1e-45 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G172000 [exp] 281 / 1e-92 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.015G012600 [exp] 273 / 2e-88 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 267 / 2e-86 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 166 / 4e-45 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030244 pacid=23153020 polypeptide=Lus10030244 locus=Lus10030244.g ID=Lus10030244.BGIv1.0 annot-version=v1.0 ATGGGGTTTTCTCTATTGATCTTTTTGGTCTTGCAGGAGTTAGAGAAGCTGAGAAAAGGAGTAAAAAAGCACGAAGAGAACCTCAAAATTTTGAGGAAGG ATGCAAACCGTCTCGATGAGATCATGACAAACTTGGATGATGTTATGGCAGAGTATCATCGTTTACGAGGCAGCAGTAAAGCTGGCGAAGAAGAAAGAAG GGAAACTGAAGAGAAGATAAAAGAGCAGAGATCCAGTGCAGCAGGGATCATTTTGGAGTTCAAGACTCGTTACCCTGAGATGGCATCTGATCTGTCCATG TTTAGGGACACGGTCGGGATCGTGGCTACTCTTGCTACCGTTAATAACGACCATCTTAGCAGGATGCTGTCAAAGTACTTAGGAAAGGAGAAGATGCTAG GGGTTGTATGCAGGACATTTGGTAGTGGTGTGAAGAACATGGAGAAGTACAACAAATTTCCAGGAAGCAGCATCAGCATGATTAACCCCAGCAAGGGAGT CCACGGCTTTGCAACTTCATTGGGGATGAGACTCCATGGCCGATTCCTTGTCATTTGCCTTGAAGAACTCGTTCCATTCCAAGGTGGGTTAGTGGACAAT GATTTCCAGAGGAGACTGGATCTCCCAGCCCCGACAATGCCCAATGGGGAAACCCCAAGTGGATTCTTGGGGTTTGCAGTGAATCTGTTGCATATGAAGA ATAGAGACTTGTGCTATACCACATTTGACGGCTATGGCCTGAGGGAGACTCTGTTTTATGCACTCTTCTCTCAACTTCAGGTCTACAAAACCAAAGCTGA TATCCGGAATGCTTTCCCTTGCATCACTCATGGTGCAGTGTCGTTGGATGGCGGGATGGTTCAGAAACCCGGCATCTTTACTCTTGGCCAAGAGGAAGAC GTGGCCGTGAAGTTCCCTGTAGTCCCAGCTGTCGGTGGCCAGAACAGCTTTCCGGCAGCATACACCGAAGCAGAAAGCATGATGAAGAGGGCAATGTGGG ACCAACTCCATCTTGCTTCCAATATAAGGAGAGAACAGCTACTGCTGGGGGGTCTAAAGACCAAATTGGCCCGCTTCTACTGA
AA sequence Show only first row Show all	>Lus10030244 pacid=23153020 polypeptide=Lus10030244 locus=Lus10030244.g ID=Lus10030244.BGIv1.0 annot-version=v1.0 MGFSLLIFLVLQELEKLRKGVKKHEENLKILRKDANRLDEIMTNLDDVMAEYHRLRGSSKAGEEERRETEEKIKEQRSSAAGIILEFKTRYPEMASDLSM FRDTVGIVATLATVNNDHLSRMLSKYLGKEKMLGVVCRTFGSGVKNMEKYNKFPGSSISMINPSKGVHGFATSLGMRLHGRFLVICLEELVPFQGGLVDN DFQRRLDLPAPTMPNGETPSGFLGFAVNLLHMKNRDLCYTTFDGYGLRETLFYALFSQLQVYKTKADIRNAFPCITHGAVSLDGGMVQKPGIFTLGQEED VAVKFPVVPAVGGQNSFPAAYTEAESMMKRAMWDQLHLASNIRREQLLLGGLKTKLARFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	1.0	0.8543
					Lus10035529 [exp]	2.0	0.8465
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Lus10018720 [exp]	2.6	0.8067
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	4.5	0.8274
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	4.7	0.7595
AT1G32583			unknown protein		Lus10001911 [exp]	7.7	0.8386
					Lus10018990 [exp]	9.2	0.8074
AT2G26680			unknown protein		Lus10030089 [exp]	9.6	0.7523
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	10.4	0.7661
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	10.8	0.8018

Compare expression of checked genes

Lus10030244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.