Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10920 136 / 3e-41 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) AT4G00980 115 / 1e-30 zinc knuckle (CCHC-type) family protein (.1) AT5G09250 66 / 2e-14 KIWI ssDNA-binding transcriptional regulator (.1.2) AT5G09240 58 / 2e-11 ssDNA-binding transcriptional regulator (.1.2.3) AT5G42060 42 / 2e-05 DEK, chromatin associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003998 [exp] 286 / 2e-95 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1) Lus10032410 [exp] 114 / 2e-32 AT4G10920 169 / 2e-54 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10023061 [exp] 83 / 2e-20 AT4G10920 132 / 7e-40 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10013733 [exp] 63 / 3e-13 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2) Lus10039207 [exp] 52 / 3e-09 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171900 [exp] 162 / 5e-48 AT4G00980 373 / 7e-125 zinc knuckle (CCHC-type) family protein (.1) Potri.001G089400 [exp] 125 / 6e-37 AT4G10920 152 / 5e-48 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Potri.007G101100 [exp] 60 / 3e-12 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain CL0609 [flax] [poplar] sPC4_like PF02229 [flax] [poplar] PC4 Transcriptional Coactivator p15 (PC4)
Representative CDS sequence Show only first row Show all	>Lus10030245 pacid=23153154 polypeptide=Lus10030245 locus=Lus10030245.g ID=Lus10030245.BGIv1.0 annot-version=v1.0 ATGGAGCCGGAGATTCAGTGCAAAATCAGGAAGACGGTGGTCAACATTCTCAAAGATGCCGATATGAGCCAGGCTACCGAGTTCAAGGTCCGAGTCCTCG CCTCCATGCGGCTCGGCATGGACCTCTCCGACATGGAGCACAAGAAGTTCGTCAGAGAAGTTCTTGAATCATATCTTCTGTCATCGGCGGAGCCGCGGAT CGGTGACGCCGCCGTCCTCGAAGGAGAGACCGCGCAGAGGGAAACGGCGACGAAGAAGGAGCTGGAGGTCAATGACAACGTTAATCGTTTTGTTTGTAAG CTATCGAATAGACGGAGCGTGTCGATAAGTGATTACAAGGGGAAGTCTCTGGTTTCCATCAGAGATTATTACTTGAAAGATGGCGAGGAGCTTCCTTCCA GACATGGAATTAGTTTGACAACTGAGCAGTGGACAGTGTTAAGGAAGAACTTTGGTGACATAGACAGTGGCATTACAGCAATGCAATCTAGATTGAGGTG A
AA sequence Show only first row Show all	>Lus10030245 pacid=23153154 polypeptide=Lus10030245 locus=Lus10030245.g ID=Lus10030245.BGIv1.0 annot-version=v1.0 MEPEIQCKIRKTVVNILKDADMSQATEFKVRVLASMRLGMDLSDMEHKKFVREVLESYLLSSAEPRIGDAAVLEGETAQRETATKKELEVNDNVNRFVCK LSNRRSVSISDYKGKSLVSIRDYYLKDGEELPSRHGISLTTEQWTVLRKNFGDIDSGITAMQSRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	0	1
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	2.4	0.8990
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	8.0	0.8653
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	8.8	0.8681
AT4G24880			unknown protein		Lus10007295 [exp]	17.7	0.8271
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	19.0	0.8780
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10028818 [exp]	21.4	0.8352
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033858 [exp]	25.0	0.8205
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	25.8	0.8541
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	27.9	0.8508
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	30.5	0.8458

Compare expression of checked genes

Lus10030245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.