Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01300 451 / 3e-157 Eukaryotic aspartyl protease family protein (.1) AT3G61820 374 / 1e-126 Eukaryotic aspartyl protease family protein (.1) AT1G25510 255 / 2e-80 Eukaryotic aspartyl protease family protein (.1) AT3G18490 254 / 4e-80 Eukaryotic aspartyl protease family protein (.1) AT3G20015 241 / 3e-75 Eukaryotic aspartyl protease family protein (.1) AT2G42980 185 / 2e-53 Eukaryotic aspartyl protease family protein (.1) AT3G25700 181 / 2e-52 Eukaryotic aspartyl protease family protein (.1.2) AT3G59080 181 / 9e-52 Eukaryotic aspartyl protease family protein (.1.2) AT5G10770 177 / 6e-51 Eukaryotic aspartyl protease family protein (.1) AT2G03200 171 / 9e-49 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003999 [exp] 558 / 0 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 233 / 5e-72 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 218 / 6e-66 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 210 / 5e-63 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 209 / 5e-62 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032482 [exp] 195 / 2e-58 AT3G18490 339 / 2e-113 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 195 / 8e-58 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 197 / 9e-57 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 192 / 2e-56 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171700 [exp] 477 / 3e-167 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 462 / 3e-161 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 264 / 8e-84 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 257 / 6e-81 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 253 / 1e-79 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 249 / 7e-78 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 204 / 5e-60 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G232600 [exp] 194 / 2e-57 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 178 / 3e-51 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 175 / 3e-50 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10030246 pacid=23153184 polypeptide=Lus10030246 locus=Lus10030246.g ID=Lus10030246.BGIv1.0 annot-version=v1.0 ATGGAAGGTAAAGCGAGAAGAATCTTCCTCTTCTTCTTCTCCTTCACCTTCGTCGTTTCCCTCTCCTCTTCTCTTCAATCCCAAACCTTAACTCTCACCA CCCTCCCTTCCCCTCCCCAATCCCTCGCCTGGTCCGACTCCGATGCAGCTGATTCAGATCCCTTGACTACTACTTCATCAGATCTCCTCACTTCCGCCGC TGAATCCACCACCGCCTCCATTTTCTCCGTCCAACTCCACCACGTCGACGCTCTCATTTCCAATTCCACTCCTCAGCAGCTTTTCAACTCCAGGCTCATC CGCGACGCATCTCGCGTGAAAACAATCGAATCTGTCTCCGCCGCCGCCGCCGCCGGCGGCGGTGTAAGAGGCGGAGCTGGATTCAGCAGCTCCGTCATCT CCGGATTGGCTCAAGGAAGCGGAGAGTACTTTACTCGGCTCGGAGTCGGAACTCCTCCGAGGTATGTTTACATGGTTTTGGATACAGGGAGCGATATTGT TTGGCTGCAGTGTGCTCCTTGCAAGAAATGCTACTCTCAGGCGGATCCGGTTTTCGATCCGAGGAAATCGAGTTCTTACGCCGGAATCCCTTGTAGAGCG CCGTTATGTCGCCGTCTGGATTCTCCGGGATGCAATTCGAAGAAGCAGACGTGTCTGTACCAGGTCTCATACGGAGACGGATCGTTCACCACCGGCGAAT TCTCCACCGAAACGCTGACATTCCGCAAGACTAGGGTTCCCCGTGTTGCGGTGGGGTGCGGCCACGACAATGAAGGACTGTTCGTCGGAGCAGCGGGGTT GTTAGGTCTAGGTAAGGGGAAGCTGTCCTTCCCGGCGCAGACTGGCCGGAGATTCAACAGGAAGTTTTCTTACTGCCTTGTTGACCGGTCGGCGTCGGCG AAGCCGTCGTCTATGGTGTTCGGCGACAAAGCCGTGTCGAGGACCGCTCGTTTCACGCCGTTGATTTCAAATCCGAAGCTGGACACGTTCTACTACGTGG AGCTTCTCGGGATGAGTGTGGGCGGGACCCGTGTCCCGAGAATCACGGCCTCGCTTTTCAAACTCAACCCGGCGGGCAACGGCGGGGTGATACTCGACTC GGGCACGTCCGTCACCAGGCTGACCCGACCCGCTTACATAGCCCTCCGCGCTGCGTTCCGGGTCGGGGCGTCGTACCTGGAGCCCTGA
AA sequence Show only first row Show all	>Lus10030246 pacid=23153184 polypeptide=Lus10030246 locus=Lus10030246.g ID=Lus10030246.BGIv1.0 annot-version=v1.0 MEGKARRIFLFFFSFTFVVSLSSSLQSQTLTLTTLPSPPQSLAWSDSDAADSDPLTTTSSDLLTSAAESTTASIFSVQLHHVDALISNSTPQQLFNSRLI RDASRVKTIESVSAAAAAGGGVRGGAGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDIVWLQCAPCKKCYSQADPVFDPRKSSSYAGIPCRA PLCRRLDSPGCNSKKQTCLYQVSYGDGSFTTGEFSTETLTFRKTRVPRVAVGCGHDNEGLFVGAAGLLGLGKGKLSFPAQTGRRFNRKFSYCLVDRSASA KPSSMVFGDKAVSRTARFTPLISNPKLDTFYYVELLGMSVGGTRVPRITASLFKLNPAGNGGVILDSGTSVTRLTRPAYIALRAAFRVGASYLEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022445 [exp]	1.0	0.9001
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	2.0	0.8952
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024911 [exp]	4.2	0.8939
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	4.2	0.8573
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	4.6	0.8600
AT1G01300			Eukaryotic aspartyl protease f...		Lus10003999 [exp]	6.5	0.8323
AT1G18485			Pentatricopeptide repeat (PPR)...		Lus10036071 [exp]	8.4	0.8521
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	8.7	0.8632
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10008739 [exp]	8.8	0.8541
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	9.2	0.8545

Compare expression of checked genes

Lus10030246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.