Plant FIBer expression Database

Lus10030247 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61800 600 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004000
[exp]
1102 / 0 AT3G61800 650 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G099300
[exp]
764 / 0 AT3G61800 638 / 0.0 unknown protein
Potri.002G171600
[exp]
761 / 0 AT3G61800 623 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09740 DUF2043 Uncharacterized conserved protein (DUF2043)
Representative CDS sequence
>Lus10030247 pacid=23153151 polypeptide=Lus10030247 locus=Lus10030247.g ID=Lus10030247.BGIv1.0 annot-version=v1.0
ATGGATGAAGAACACGGGGGAGGAGGAGGAGGAAGAAGAGATAAGGTGAGGGATTTGATCGAGAAAGCCACCGATTCAACGGCGCCTTACGTAGACTCCC
GTCTCCTCACGGCCATCAAATCGACGGTCCGCTACTCCGACTCCGAGCTCCGGCTCGCCGCTCAAACACTTATGGAACTCATGAAACGCGATCACTCCCA
GGTGCGTTATCTCTCCCTTCTGATAGTCGACGAATTGTTCATGCGATCGAAGCTTTTCAGAAGTCTTTTTGTTGAGAATCTGGACCAGCTGTTGACCTTA
AGCGTTGGTTTCAAAAGAAATCTCCCGCTTCCTGCTCCACCTGCTGTTGCCACTGTTCTGCGATCAAAGGCAATTGAATTCTTGGAGAAGTGGCATGAAT
CATTTGGGGTTCACTATCGACAAATCAGACTAGGATTCGACTATCTCAAGAACACTTTGCGCCTGCAGTTTCCTAACGTACAGGGGAACATAGCACGCAT
TCGGCAGGAGAGGAGCGAGAGGGAGGCTAGGTCGAAAGAGATTCTGCAGAAGAAGTTCGAAACTCTGAAGGAAAATCTGTCTTCTATGAAAGAAGAGATT
CAGGAGATGATTGATGAGATTAACCAATGCTTGGAAATCGTTACTTGTCAAGAGGACAGGCCCCTCAGCCCTATAGACGAGGAAGGTTATGAGGAGTTCC
GATCATTAGAGCTGCAGCAAATCCGTATCAACTCGTTAAAGGAAGCGGAAAAGGTCCAGGAGGATGCTGAGAATAGAGTGGTTTTCGATACTCTGAGGGA
GCATTACAAACTTTTGGTGACGAAGCATCTAGTTTTTGTGCAGGAATCGATCTCTGTCCTTGTAAGGGTTGAAGTGACGACGAATGCTAGACTCCGGGAT
TCTATGCTGAAGGAACTCATCGACTTCCGGAATCAAATCCAATTAGTGAAGAAAAAATGTGCCGAATCAGGCTGTGCTCTCCCTGCCGTTACAAAGACTG
ATAATAAAGAAGAAGAAGAAGAAGAGGATTTTTGGGAGGAAGGTAAAGTTGAGAAATCCACTCGAATTGGGGGCTCCAGTGAATCATCAAATAAGCCGAA
TGGAAGTTCATCCGAGCTGTCAACTTCCTGTGAGGTGAAAATAAAGTTGCCTGAATCTGGCGGCAGTACCTCGAAATGTATCAGGACTGATTCCGACCTT
CTTAAAAGTAAGCTCCTAGAAGAAGCCCCGGTCGTACAAAGGGGCTCGTTCTTGGATAATTGGGGTCCGAATCGGGATGTATTGGCGAACCACAGGGGTA
TGGAGATTGATAATCACTGGGGTAGGGTCGACTACGATGCAGTGATTCCAGCAGAAAGAATTGCAGAGCTGAACATGTCAGCTACTATATACAAAGAAGA
GCAAGTCGAAATCCAGCCATGTCGTGCGCCGTTACGAAAAGGTGGACTTTGCCCAAGGAGGGACTTGAGAGTGTGTCCTTTCCACGGACCTGTCGTTCCC
AGAGACGATGAAGGAAATCCCATCGTTCAAAGCACGAAGTTGACTCCTTCGACAAGTCTCGAACCATTTCCGAAGTCTGAAAATCCGGAGAGCAGCAAAG
ATCTCGACTTTGGAGTCAATCTAGCAAAGCAAGCAGTGAAAAACGTGAGGGATAGAGAGAATGGTGATGCCAAGAGGAGGAAGATGGAGATGCAGTCGAT
GAAACGTGCTAAGCGTGCTAAGATACGGGAACATAACGAAGCGGTTCTGAAAGATGCTGCATTGGCCTCAAGTTCGAGATCTGAATGGGGCGGAGAAGAA
GATGCAGATGCTGTATTGTCATCTAGAAACAAGAAGGAAACCCTTGCATCGATGCTACGTAAGAAAGTAACGAGGAAGGACAGGATATCGCAACGACTTT
TGAGTACTAAAGCCAGCGATTCCACCGTCAGGCAGCTTACTCAGGGTGCTGACTCAACGTATCGAGAAGCCTTCCCGAATCAGTGGTAG
AA sequence
>Lus10030247 pacid=23153151 polypeptide=Lus10030247 locus=Lus10030247.g ID=Lus10030247.BGIv1.0 annot-version=v1.0
MDEEHGGGGGGRRDKVRDLIEKATDSTAPYVDSRLLTAIKSTVRYSDSELRLAAQTLMELMKRDHSQVRYLSLLIVDELFMRSKLFRSLFVENLDQLLTL
SVGFKRNLPLPAPPAVATVLRSKAIEFLEKWHESFGVHYRQIRLGFDYLKNTLRLQFPNVQGNIARIRQERSEREARSKEILQKKFETLKENLSSMKEEI
QEMIDEINQCLEIVTCQEDRPLSPIDEEGYEEFRSLELQQIRINSLKEAEKVQEDAENRVVFDTLREHYKLLVTKHLVFVQESISVLVRVEVTTNARLRD
SMLKELIDFRNQIQLVKKKCAESGCALPAVTKTDNKEEEEEEDFWEEGKVEKSTRIGGSSESSNKPNGSSSELSTSCEVKIKLPESGGSTSKCIRTDSDL
LKSKLLEEAPVVQRGSFLDNWGPNRDVLANHRGMEIDNHWGRVDYDAVIPAERIAELNMSATIYKEEQVEIQPCRAPLRKGGLCPRRDLRVCPFHGPVVP
RDDEGNPIVQSTKLTPSTSLEPFPKSENPESSKDLDFGVNLAKQAVKNVRDRENGDAKRRKMEMQSMKRAKRAKIREHNEAVLKDAALASSSRSEWGGEE
DADAVLSSRNKKETLASMLRKKVTRKDRISQRLLSTKASDSTVRQLTQGADSTYREAFPNQW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61800 unknown protein Lus10030247
[exp]
0 1
AT1G03750 SWI2, SNF2, CHR... CHROMATIN REMODELING 9, switch... Lus10033669
[exp]
13.3 0.7317
AT3G29270 RING/U-box superfamily protein... Lus10030699
[exp]
14.6 0.7850
AT1G55000 peptidoglycan-binding LysM dom... Lus10029925
[exp]
18.0 0.7581
AT4G32600 RING/U-box superfamily protein... Lus10008106
[exp]
27.1 0.7369
AT5G54080 HGO "homogentisate 1,2-dioxygenase... Lus10042839
[exp]
41.1 0.7730
AT3G05010 Protein of unknown function, t... Lus10033835
[exp]
68.8 0.7455
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Lus10021943
[exp]
72.9 0.7311
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Lus10001862
[exp]
97.5 0.7346
AT4G35220 Cyclase family protein (.1) Lus10019822
[exp]
97.5 0.7343
AT4G04770 ABCI8, ATNAP1, ... LONG AFTER FR, ARABIDOPSIS THA... Lus10035874
[exp]
115.8 0.7261

Lus10030247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.