Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61790 487 / 1e-174 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 471 / 2e-168 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 411 / 5e-145 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 409 / 5e-144 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 361 / 2e-126 TRAF-like superfamily protein (.1) AT3G13672 213 / 3e-68 TRAF-like superfamily protein (.1.2) AT5G37870 90 / 2e-20 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 86 / 7e-19 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 80 / 1e-16 Protein with RING/U-box and TRAF-like domains (.1) AT1G66660 76 / 2e-15 Protein with RING/U-box and TRAF-like domains (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004001 [exp] 580 / 0 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 475 / 9e-170 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 475 / 9e-170 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 421 / 5e-148 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 416 / 7e-146 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10039202 [exp] 408 / 8e-144 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10013739 [exp] 408 / 1e-143 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 44 / 9e-05 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 43 / 0.0001 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171500 [exp] 497 / 1e-178 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 491 / 3e-176 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 479 / 1e-171 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 475 / 6e-170 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 434 / 5e-154 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 434 / 5e-154 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 418 / 7e-148 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 416 / 6e-147 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G026200 [exp] 409 / 2e-144 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 395 / 2e-138 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10030248 pacid=23153039 polypeptide=Lus10030248 locus=Lus10030248.g ID=Lus10030248.BGIv1.0 annot-version=v1.0 ATGGAAGTGGACGGCAGCCAATGCGTGCCGGCAACGGACGACGCGGAGACCGCCGACACCGCCGATCTCCACCGGAGGAATCCGTTCCCTTCTTCTTCAT CTTCCAAGCCTCACTTCAAGACCAGCACCGGCAATTCTCTCACCTCCTCGATTCACACTAGCAGCGTCCATGAGTTGCTTGAATGTCCTGTTTGTACCAA CTCCATGTATCCTCCGATTCATCAGTGCCAGAACGGGCATACGCTCTGTTCAACCTGCAAAACAATGGTGCACAACAGGTGCCCGACCTGTAGACAAGAG CTCGGAGATATCAGATGTCTGGCATTGGAGAAGCTGGCCGAATCGCTCGAGCTTCCCTGCAAGTACATGTATCTCGGATGTGCCGAGATCTTCCCTTACT ACAGCAAACTCCAGCATGAATCGCTTTGCAACTTCAGACCATACAACTGCCCTTACGCCGGTTCCGAGTGTTCCATTGTTGGAGACGTCCCTTTCCTCGT TGCTCATCTGAGGAACGATCACAAGGTGGATATGCATTCCGGGTGCACTTTCAACCACCGTTACGTGAAGTCCAATCCACGCGAAGTTGACAATGCGACC CGTGAAGTTGACAACGCGACTTGGATGTTAACTGTTTTCCACTGCTTTGGCCAGTACTTCTGCCTCCACGTCGAAGCATTCCAGCTTGAAATGGCGCCCG TCTACATGGCATTCCTCCGATTCATGGGCGACGAAGCAGAAGCCCGGAACTACAGCTACAGCCTAGAGGTCGGTGGGTACGACCGCAAGCTCATCTGGGA AGGAACTCCCAGAAGCATCAGAGATAGTCACAGGAAGGTCAGGGACAGCTACGACGGGCTGATTATCCAGAGGAACATGGCGCTTTTCTTCTCAGGCGGC GACAGGAAAGAGCTAAAGCTGCGAGTTACCGGTCGGATATGGAAAGAACAGCACAATCCAGACGGAGGAGGAGCGTCGTCCTTGCCAAACACCTCTACTT AA
AA sequence Show only first row Show all	>Lus10030248 pacid=23153039 polypeptide=Lus10030248 locus=Lus10030248.g ID=Lus10030248.BGIv1.0 annot-version=v1.0 MEVDGSQCVPATDDAETADTADLHRRNPFPSSSSSKPHFKTSTGNSLTSSIHTSSVHELLECPVCTNSMYPPIHQCQNGHTLCSTCKTMVHNRCPTCRQE LGDIRCLALEKLAESLELPCKYMYLGCAEIFPYYSKLQHESLCNFRPYNCPYAGSECSIVGDVPFLVAHLRNDHKVDMHSGCTFNHRYVKSNPREVDNAT REVDNATWMLTVFHCFGQYFCLHVEAFQLEMAPVYMAFLRFMGDEAEARNYSYSLEVGGYDRKLIWEGTPRSIRDSHRKVRDSYDGLIIQRNMALFFSGG DRKELKLRVTGRIWKEQHNPDGGGASSLPNTST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	0	1
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	9.1	0.8565
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	12.7	0.8028
AT3G12650			unknown protein		Lus10015695 [exp]	15.0	0.8324
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	16.2	0.8116
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10038539 [exp]	17.1	0.7776
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	22.1	0.8136
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	22.9	0.8226
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	23.9	0.8403
					Lus10037253 [exp]	27.1	0.8188
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	29.1	0.8212

Compare expression of checked genes

Lus10030248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.