Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25970 747 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 443 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 447 / 1e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 436 / 5e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 421 / 6e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 413 / 8e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 408 / 3e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 401 / 3e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 392 / 2e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 394 / 6e-126 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004002 [exp] 849 / 0 AT3G25970 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 455 / 5e-150 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 449 / 3e-147 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 447 / 1e-143 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 438 / 2e-142 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 440 / 1e-141 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 439 / 9e-139 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 421 / 1e-135 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 416 / 1e-134 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G146800 [exp] 936 / 0 AT3G25970 805 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 452 / 1e-145 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 441 / 2e-145 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 444 / 1e-144 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 445 / 2e-143 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 443 / 1e-142 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 434 / 2e-141 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 431 / 1e-139 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 426 / 3e-138 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 425 / 1e-137 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030249 pacid=23153183 polypeptide=Lus10030249 locus=Lus10030249.g ID=Lus10030249.BGIv1.0 annot-version=v1.0 ATGAGAGGATTCACCTCTGTCATTGAGCACTTTTCCCCCTCTGCTTTATCTCGAGCTTCCATAAACCATTGCCAGGCAATCAAAGTTGGAGGATTTTTCG ATATATACGTGGCGAACAACATACTGAACAGTTACGTGCGATGCCGGAATTCATCCCTGGATGTTGCTCACAAACTGTTCGACGAAATGCCTCAAAGAGA CTCTGTCACTTGGAACACTATTATCACCGGGTATGTGAATTCGGGAAACTTGGAAACTGCTTGGGAGGTTCAAATTTCCAAAGCAAGATGTGGGTTCTAT CCGGATTTGTACAGCTTCGGCAGCTTGCTAAAGGGTGTTGCTCTTGCTCGCCGGATCGTATCCGGTCAGCTACTGCACTGCCAGATTGTTAAGATGGGTT TTGACGAGAGTGTCTATGCAGGGAGCGCGCTCCTCGACATGTATGCCAAGTGCGGGAGTGTCGATGATGCTCTTACTGTGTTCGAGGACATGCCTCAACG CAATTCGGTATCGTGGAACGCTCTCATTTCTGGGTTTGTGAAGGTTTGTGATAGAGATTCTGCATTTCGGTTGTTTGATTGTATGGAGAAGGAAGGTGTA AACCCTGATGATGGATCATTGTCTCCTCTTCTGACGTTACTTGATGATGAGAAGTTCTGTAGCTTAACAATGCAGCTTCACTGTAAGTCCGTAAAACATG GGGTGGAGTTTGAGAACACCGTGTGCAACGCGACGATAACTGCTTATTCCGAATGTGGTTCGTTGGATTGTGCGAAAAGACTTTTCGAGGGTGCAGTTCT TTCCTCGCAGGATGTAGTTACGTGGAACTCGATGCTCGCAGCTTATCTTGCCCATGGTAAAATCGAGGCTGCGTTCAAGCTTTTCGTGGAAATGCAAGAG GCCGGGTTTGAGCCTGACATATACACTTATACTAGCATTCTAAGTGCTTGCTCTCAAGAAACACTTCACCTTGGAAAATCTCTCCATGGGTTGATTATCA GGAAAGGGTTTCCCAATTACGTGCCGATCTGCAATGCGTTGATGGCCATGTACATCTGTTGCTATGATAAAGTAATGCGAGATGCATTGGATGTATTTCG ATTTATGGAGTCCAAAGATCGGGTCTCGTGGAATTCTGTATTAACTGGGTTTTCGCAGAGTTCGCTTAGTGAAGAGGCATTGAAGTTCTTTAAGCATATG AGATCTTCTCTGGTGGAAACTGATCACTATTCTTTCTCAGCTGCGCTTAGATCTTGCTCTGATCTAGCTACTCTGCAATTAGGTAAACAGATTCATGCTT TGACAGTTAAATCCAGTTTGGAGTCGAATGACTTTGTTGCTAGTGCATTGATTTTTATGTATTTGAAATGCGGAATGCTGGAAGACGCTCGAGAATCATT TGAAGAGACCAGGAAAGACAATGCAATCACTTGGAACTCGATAATCTTCGCATATGCTCAACACGGCCAGGGTCATGCGGCCCTGGAACTCTTCTCCGAA ATGAGGGGAAACCGGGTGAAGTTAGACCATATAACCTTTGTAGCAGTTCTGACGGCATGTAGTCACATTGGATTAGTTGAGCAAGGCCGGAAGTTTCTCA AATCCATGGCATCAGAGTATGGGATTCCACTGCGAATGGAGCACTACGCTTGTGCAGTAGATCTTTTCGGTCGAGCTGGGTATTTAAACGAGGCAAAGGA CTTGATCGAGTCGATGCCTTATAAACCGGATTCCATGGTGTTGAAGACTTTACTGGCTGCTTGCAGAGCGTGTGGTAACATGGAACTAGCAGCTCAAGTG GCGAGCCATCTGCTCGAGCTAGAGCCGGAGGAGCACTGCAGTTACGTCATCTTATCGAACATGTATGCACGTCTTAGGAGATGGGATGAGAAAGCCAGTC TAACCAGGCTGATGAAGGAGAGGAAGGTGAAGAAGGTTCCTGGTTGGAGTTGGATCGAGGTTAATAATGCGGTTCATTCTTTCATCGCTGATGATCGGTC CAGTCCCCATTTCGAGGAGATATACTTGAGATTGGATGAACTGATGCAAGAAATGAAGTGGCTGGAGTATGTTAGTACCCTTAGTTCTTCAACTGATGCT TTGGACTTCTATAACGAATCTCAAGCCGTCTAG
AA sequence Show only first row Show all	>Lus10030249 pacid=23153183 polypeptide=Lus10030249 locus=Lus10030249.g ID=Lus10030249.BGIv1.0 annot-version=v1.0 MRGFTSVIEHFSPSALSRASINHCQAIKVGGFFDIYVANNILNSYVRCRNSSLDVAHKLFDEMPQRDSVTWNTIITGYVNSGNLETAWEVQISKARCGFY PDLYSFGSLLKGVALARRIVSGQLLHCQIVKMGFDESVYAGSALLDMYAKCGSVDDALTVFEDMPQRNSVSWNALISGFVKVCDRDSAFRLFDCMEKEGV NPDDGSLSPLLTLLDDEKFCSLTMQLHCKSVKHGVEFENTVCNATITAYSECGSLDCAKRLFEGAVLSSQDVVTWNSMLAAYLAHGKIEAAFKLFVEMQE AGFEPDIYTYTSILSACSQETLHLGKSLHGLIIRKGFPNYVPICNALMAMYICCYDKVMRDALDVFRFMESKDRVSWNSVLTGFSQSSLSEEALKFFKHM RSSLVETDHYSFSAALRSCSDLATLQLGKQIHALTVKSSLESNDFVASALIFMYLKCGMLEDARESFEETRKDNAITWNSIIFAYAQHGQGHAALELFSE MRGNRVKLDHITFVAVLTACSHIGLVEQGRKFLKSMASEYGIPLRMEHYACAVDLFGRAGYLNEAKDLIESMPYKPDSMVLKTLLAACRACGNMELAAQV ASHLLELEPEEHCSYVILSNMYARLRRWDEKASLTRLMKERKVKKVPGWSWIEVNNAVHSFIADDRSSPHFEEIYLRLDELMQEMKWLEYVSTLSSSTDA LDFYNESQAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	0	1
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	1.0	0.8754
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	1.4	0.8739
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	3.0	0.8639
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10004002 [exp]	3.2	0.8446
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	3.7	0.8379
AT5G25530			DNAJ heat shock family protein...		Lus10008109 [exp]	3.9	0.8002
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	4.5	0.8460
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	4.9	0.8434
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	8.0	0.8311
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	9.5	0.7885

Compare expression of checked genes

Lus10030249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.