Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46500 485 / 2e-170 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 436 / 5e-155 Protein kinase superfamily protein (.1) AT5G24240 439 / 2e-152 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G13640 206 / 2e-61 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G03890 205 / 6e-61 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 203 / 2e-60 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 200 / 9e-60 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 191 / 1e-56 Protein kinase superfamily protein (.1.2) AT1G27570 102 / 4e-24 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 57 / 2e-09 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004005 [exp] 627 / 0 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10018104 [exp] 476 / 4e-167 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10022411 [exp] 476 / 8e-167 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 460 / 2e-161 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 459 / 4e-160 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 210 / 1e-62 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 209 / 3e-62 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 192 / 4e-56 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099000 [exp] 511 / 3e-180 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.012G014600 [exp] 493 / 2e-173 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 486 / 2e-170 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.015G013600 [exp] 464 / 2e-161 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.008G112200 [exp] 214 / 2e-64 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.010G137400 [exp] 213 / 6e-64 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 204 / 3e-61 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 180 / 6e-52 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 85 / 8e-21 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10030251 pacid=23153068 polypeptide=Lus10030251 locus=Lus10030251.g ID=Lus10030251.BGIv1.0 annot-version=v1.0 ATGTCGGCTGCTGGGAATGATCCAATCAAGTCTATGGAAGGTACAGGAGGAGCTTATTTCATGCAGGATTCTCTTGGGCAGAAGTTTGTTTCGGTTTTTA AACCGATAGACGAGGAGCCTCTAGCTGTCAACAACCCTCAGAAGTTGCCTTCTTCGCCTAACGGTGAGGGACTGAAGAAAGGTACGGTAGTCGGAGAAGG TGCTCTGAGGGAAGTTGCAGCGTACATTTTGGATCATCCAAAGGGAGGAAAGAGGTCGTTATTCGGGAACGATGAACACGGATTTGCTGGAGTTCCGCCG ACTGTTATGGTGAAGTGTTTGCACAGAGGATTTCACCATCCGGAGGGTGTGAACGTTAAGATAGGTTCTTTGCAGATGTTTATCAAGAACGAGGGCAGTT GTGAGGATATCGGTCCTGGTGTTTTTCCTGTCGAGGAAGTTCACAAAATCGCTGTTTTCGATATAAGGCTGGCTAATGCGGATAGGCATGGTGGGAATCT TCTGTTCCGGAAAGATGCGGAATCTGGCAGGACTGTGTTGATTCCGATCGATCATGGATACTGCTTGCCTGAAAGTTTCGAAGACTGCACGTTCGAGTGG CTCTACTGGCCGCAAGCTCGTCAGCCTTTCAACGCAGAGACTGTCGACTACATAAGATTGCTGGACGCAGAAGACGATATCGCCCTTCTCCAGTTCCACG GCTGGGATGTGCCGGCCGGTTGTGCTCGGACGCTTCGAATCTCCACCATGCTTCTGAAGAAAGGAGTCGAGAAGGGGCTGACTCCCTTCGACATCGGGAA CATCATGTGCAGAGAGAGGTTGAACAAGGAATCGGCAATCGAGGAGATTGTTCGCGAAGCAGAAGACTTGGTTCTTCCAGGGACGAGCGAGGAAGCGTTG TTCGAGGCCATATCGGAGATCATGGATCGCCGTCTCGATGAGATTGCCGTGACGAAGTAG
AA sequence Show only first row Show all	>Lus10030251 pacid=23153068 polypeptide=Lus10030251 locus=Lus10030251.g ID=Lus10030251.BGIv1.0 annot-version=v1.0 MSAAGNDPIKSMEGTGGAYFMQDSLGQKFVSVFKPIDEEPLAVNNPQKLPSSPNGEGLKKGTVVGEGALREVAAYILDHPKGGKRSLFGNDEHGFAGVPP TVMVKCLHRGFHHPEGVNVKIGSLQMFIKNEGSCEDIGPGVFPVEEVHKIAVFDIRLANADRHGGNLLFRKDAESGRTVLIPIDHGYCLPESFEDCTFEW LYWPQARQPFNAETVDYIRLLDAEDDIALLQFHGWDVPAGCARTLRISTMLLKKGVEKGLTPFDIGNIMCRERLNKESAIEEIVREAEDLVLPGTSEEAL FEAISEIMDRRLDEIAVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	1.4	0.8307
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	2.0	0.8128
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	2.2	0.8378
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	5.5	0.8159
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	5.9	0.7906
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10013702 [exp]	6.0	0.7831
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	8.5	0.7895
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	8.8	0.7840
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	8.9	0.7897
AT2G46940			unknown protein		Lus10009965 [exp]	12.7	0.7929

Compare expression of checked genes

Lus10030251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.