Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24270 253 / 9e-86 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G17615 226 / 2e-75 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 225 / 6e-75 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26570 225 / 1e-74 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 221 / 2e-73 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G33000 222 / 3e-73 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT1G64480 219 / 9e-73 CBL8 calcineurin B-like protein 8 (.1) AT4G16350 190 / 4e-61 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G26560 184 / 1e-58 CBL7 calcineurin B-like protein 7 (.1) AT4G01420 180 / 2e-57 CBL5 calcineurin B-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004006 [exp] 301 / 2e-105 AT5G24270 203 / 2e-66 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 273 / 7e-94 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10022407 [exp] 271 / 5e-93 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 231 / 2e-77 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 228 / 5e-76 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10011028 [exp] 223 / 4e-74 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10023069 [exp] 221 / 4e-73 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 223 / 9e-72 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 213 / 2e-69 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 264 / 3e-90 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 263 / 5e-90 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 260 / 1e-88 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 229 / 1e-76 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.006G230200 [exp] 230 / 2e-76 AT4G33000 271 / 4e-92 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.001G150200 [exp] 228 / 4e-76 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.003G084200 [exp] 227 / 1e-75 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.016G003500 [exp] 226 / 4e-75 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 226 / 4e-75 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.006G002900 [exp] 225 / 1e-74 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030252 pacid=23153164 polypeptide=Lus10030252 locus=Lus10030252.g ID=Lus10030252.BGIv1.0 annot-version=v1.0 ATGGGTTGCACTTCCTCCAAGACAGCAGCTCAGGATGAACCTCGCCTGGCCACGTTTAGACGTCTCGCCGCCAGAACACCTTTTAATGTGAATGAGGTGG AGTCTTTGTACGAGCTGTATAAGAGATTAAGCAATTCCATTGTGCAAGATGGTCATATACAGAAGGAAGACTTCCAATTTGCGCTGTTCAGAACTACAAA GAAACAGAATCTCTTTGCGGACAGGGTATTCGATCTTTTCGATGTTAACCGAGATGGGCATATCGAATTCGGAGAGTTTGTTGACTCATTGAGTGTGTTT CACCCCAGAACTCCCACTGCTGTCAAAATCAAGTGTGCATTCAAGCTGTATGATTTAAGGCACACTGGTTACATCGAGCGAGAAGAGTTGAAAGATATGG TAGTGGCACTGCTTACTGAATCGGACCTGGTTCTCTCCAAAGATGTCGTTGAACAAATCGTGGATAAGACATTTGATGATGCGGATTCGAAAGCTGATGG GAGGATTGATCAGGAAGAGTGGGAAGACTACGTGGAAAGAAACCCTTCATTGCTGAAGAACATGACACTTCCCTACCTAATGGACATTACCTTGTCGTTT CCAAGCTTTGTAATGAGAACTGAAGCTGAAGAATCGGAACTGTAG
AA sequence Show only first row Show all	>Lus10030252 pacid=23153164 polypeptide=Lus10030252 locus=Lus10030252.g ID=Lus10030252.BGIv1.0 annot-version=v1.0 MGCTSSKTAAQDEPRLATFRRLAARTPFNVNEVESLYELYKRLSNSIVQDGHIQKEDFQFALFRTTKKQNLFADRVFDLFDVNRDGHIEFGEFVDSLSVF HPRTPTAVKIKCAFKLYDLRHTGYIEREELKDMVVALLTESDLVLSKDVVEQIVDKTFDDADSKADGRIDQEEWEDYVERNPSLLKNMTLPYLMDITLSF PSFVMRTEAEESEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10030252 [exp]	0	1
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	2.8	0.9252
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	6.9	0.9235
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	9.2	0.9194
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	11.0	0.8926
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	12.3	0.9240
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	12.6	0.9207
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	15.2	0.9047
AT1G04555			unknown protein		Lus10014458 [exp]	17.2	0.9182
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	17.5	0.9075
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	20.2	0.9059

Compare expression of checked genes

Lus10030252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.