Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61770 219 / 8e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G67600 124 / 7e-37 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 117 / 2e-34 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G21610 108 / 9e-31 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT3G12685 79 / 9e-19 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006432 [exp] 120 / 3e-35 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10011373 [exp] 119 / 4e-35 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10035299 [exp] 108 / 2e-30 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10036984 [exp] 103 / 3e-29 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10000883 [exp] 100 / 2e-27 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10003670 [exp] 100 / 4e-27 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 99 / 6e-26 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10014550 [exp] 92 / 5e-25 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10001756 [exp] 61 / 1e-11 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171300 [exp] 237 / 8e-80 AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.010G056600 [exp] 124 / 9e-37 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 113 / 1e-32 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 104 / 4e-29 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 101 / 5e-28 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G176100 [exp] 62 / 2e-12 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF02681 [flax] [poplar] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Lus10030253 pacid=23152990 polypeptide=Lus10030253 locus=Lus10030253.g ID=Lus10030253.BGIv1.0 annot-version=v1.0 ATGTCCGGGTTATGGGCTTGGTTCGCTGCTCAGTCGATCAAGATATGTTTGAATTTTTTCGTGGAGAGGAAGTGGGATTTCAGGATTCTGTTTGCTTCCG GTGGGATGCCGTCCTCCCACTCTGCTCTGTGTACTGCTTTGACTACGGCCGTGGCTCTCTGCCATGGCGTGGCGGATTCTTTGTTTCCGGTTTGTTTGGG GTTTAGCCTTATTGTTATGTACGATGCTATTGGCGTCAGGCGCCATGCCGGGATGCAAGCTGAGGTTCTAAACAAGATAGTTGAGGATCTGTTCCAAGGG CATCCAATAAGTGAAAGAAAGTTGAAGGAGCTATTGGGTCATACTCCATCCCAAGTCTTTGCTGGAGCTCTGCTGGGGATTTTGGTAGCCTGTATCTGTT GCCAGGGTTGCTTAGTTGCGACCTAA
AA sequence Show only first row Show all	>Lus10030253 pacid=23152990 polypeptide=Lus10030253 locus=Lus10030253.g ID=Lus10030253.BGIv1.0 annot-version=v1.0 MSGLWAWFAAQSIKICLNFFVERKWDFRILFASGGMPSSHSALCTALTTAVALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNKIVEDLFQG HPISERKLKELLGHTPSQVFAGALLGILVACICCQGCLVAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10030253 [exp]	0	1
AT1G66080			unknown protein		Lus10010967 [exp]	1.7	0.9238
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	5.7	0.9136
AT3G06150			unknown protein		Lus10004424 [exp]	7.5	0.8898
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	7.7	0.8986
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	8.9	0.9024
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Lus10026673 [exp]	9.8	0.8834
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	9.9	0.9069
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Lus10030192 [exp]	14.1	0.8888
					Lus10019698 [exp]	15.2	0.8774
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	15.5	0.8815

Compare expression of checked genes

Lus10030253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.