Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61760 1025 / 0 ADL1B DYNAMIN-like 1B (.1) AT5G42080 1018 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G60190 839 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 825 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 775 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT2G14120 249 / 7e-73 DRP3B dynamin related protein (.1.2.3) AT4G33650 247 / 7e-72 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G59610 191 / 1e-51 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 191 / 2e-51 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G60530 113 / 1e-27 DRP4A Dynamin related protein 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004007 [exp] 1172 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 995 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 993 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 978 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10019170 [exp] 835 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10019506 [exp] 810 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 784 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 780 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10014041 [exp] 241 / 1e-69 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G171200 [exp] 1067 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 1025 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 1020 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G135100 [exp] 847 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 844 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.001G147500 [exp] 842 / 0 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 838 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.017G041800 [exp] 255 / 7e-75 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 254 / 2e-74 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 187 / 2e-54 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10030255 pacid=23152959 polypeptide=Lus10030255 locus=Lus10030255.g ID=Lus10030255.BGIv1.0 annot-version=v1.0 ATGGACAATCTGATATCCCTGGTGAACAAGATTCAAAGAGCTTGTACGGCCTTAGGCGACCATGGCGAAGAGAGTGCATTGCCTACTCTCTGGGAAGCTC TTCCCGCCATCGCCGTCGTCGGCGGCCAGAGTTCGGGAAAGTCGTCAGTGTTAGAGAGTATAGTTGGAAAGGATTTTCTACCTCGTGGAGCAGGGATTGT TACACGGAGACCTCTTGTGTTGCAGCTTCATAAGATTGATGAAACAAGAGAATATGCAGAGTTTATGCACCTCCCAAGAAAGAGATTCACCGACTTCGCT ACGGTGAGGCAGGAGATTTCCGATGAGACTGATCGTGAGACTGGACGCTCCAAGCAAATCTCTACTGTTCCAATCCACCTTAGCATTTTCTCTCCAAACG TGGTGAACTTGACATTGGTTGATCTTCCTGGACTCACGAAAGTGGCTGTAGAGGGTCAACATGAGAGTATTGTGCAGGAAATAGAGAACATGGTCAGGTC ATATATCGAAAAGGTTGACAATCTATCCGAAAACATCTTGTCATTGCAGCCAAACTGTATAATCTTAGCAATTTCTCCTGCTAATCAAGATCTTGCTACG TCTGATGCAATTAAGATTTCTCGTGAAGTTGACCCTAAAGGCGAGAGGACATTTGGAGTTTTGACCAAGATTGATCTTATGGACCAAGGTACTAATGCAG TTGATATCCTGGAAGGAAGATCATATAAGCTTCAGTTTCCATGGATTGGTGTCGTTAATCGCTCTCAAGCTGATATCAACAAAAGTGTGGACATGATAGC AGCCCGGCGTAGAGAGCGCGAATATTTTCAAAGCAGCCAGGAATATAGACATCTAGCTCAAAGGATGGGATCTGAGCATTTAGGAAAGATGATGTCAAAG TCCCTCATCAGTAAAACCATCATCGAGCTAGAAACAGAGTTAAGCCGTCTTGGAAGACCTGTTGCTACTGATGCTGGTGGGAAGTTATACATGGTCATGG AAATTTGCCGAGCTTTTGATCAAATATTCAAAGAACATCTTGATGGCGTGCGTTCAGGTGGTGAAAAAATCTACCAAGTATTTGATAATCAACTACCGGC TGCTTTAAAGAGACTGCAGTTCGACAAACACTTATCGCTTGATAATGTGCGAAAACTCATCACAGAAGCTGATGGATACCAGCCACATCTGATAGCTCCT GAGCAAGGGTATCGCCGTCTCATTGAGTCCACCTTGATAACCATCAAAATTCCTGCTGAAGCAGCTGTCGATGCGGTCCATGCTATACTGAAAGACATGG TTCAGAAGTCTATCAATGAAACACAAGAACTGAAGCAATATCCTACCCTAAAAGTGGAAGTAACCAACGCGGCAGTGGAGTCTCTAGAAAGGATGAAGGA AGAAAGCAGGCGAGCAACCATACAGCTAGTGGACATGGAATGCTGTTACTTGACAGTTGAGTTCTTCCGTAAGCTGCCACAAGACATCGAGAAGGGCGGG AATCCATCGCACTCGATCTTCGATCGATACAACGACGCGTACCTCAGAAGAGTTGGGAGCAACGTATTGCAATATGTGAACTTGGTGTGTGCAAGTCTGA GGAACTCGATTCCGAAGTCAGTGGTGTATTGCCAAGTAAGGGAAGCCAAAAGAAGCTTGCTTGATCATTTCTTCGCAGAGTTGGGTAAGAGGGAGACGAG ACAGATGAGCTCATTACTGGATGAAGATCCAGCAGTGATGCAGCGGCGAACCAACCTAGCCAAGAGGCTGGAACTCTACAGAAGTGCTCAAGTTGAGATC GATGCAGTTGCTTGGTCCAGATAA
AA sequence Show only first row Show all	>Lus10030255 pacid=23152959 polypeptide=Lus10030255 locus=Lus10030255.g ID=Lus10030255.BGIv1.0 annot-version=v1.0 MDNLISLVNKIQRACTALGDHGEESALPTLWEALPAIAVVGGQSSGKSSVLESIVGKDFLPRGAGIVTRRPLVLQLHKIDETREYAEFMHLPRKRFTDFA TVRQEISDETDRETGRSKQISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVEGQHESIVQEIENMVRSYIEKVDNLSENILSLQPNCIILAISPANQDLAT SDAIKISREVDPKGERTFGVLTKIDLMDQGTNAVDILEGRSYKLQFPWIGVVNRSQADINKSVDMIAARRREREYFQSSQEYRHLAQRMGSEHLGKMMSK SLISKTIIELETELSRLGRPVATDAGGKLYMVMEICRAFDQIFKEHLDGVRSGGEKIYQVFDNQLPAALKRLQFDKHLSLDNVRKLITEADGYQPHLIAP EQGYRRLIESTLITIKIPAEAAVDAVHAILKDMVQKSINETQELKQYPTLKVEVTNAAVESLERMKEESRRATIQLVDMECCYLTVEFFRKLPQDIEKGG NPSHSIFDRYNDAYLRRVGSNVLQYVNLVCASLRNSIPKSVVYCQVREAKRSLLDHFFAELGKRETRQMSSLLDEDPAVMQRRTNLAKRLELYRSAQVEI DAVAWSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	0	1
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	8.7	0.7720
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	9.6	0.8279
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	10.9	0.8199
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	16.1	0.8089
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10038335 [exp]	18.3	0.7098
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	18.3	0.7743
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	21.8	0.7962
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	22.3	0.8007
AT1G09812			unknown protein		Lus10035787 [exp]	23.4	0.8124
					Lus10003411 [exp]	23.7	0.7962

Compare expression of checked genes

Lus10030255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.