Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004008 [exp] 81 / 4e-19 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030256 pacid=23153113 polypeptide=Lus10030256 locus=Lus10030256.g ID=Lus10030256.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTGGGGCTGAGATGGAGAAGAGGCACGAAATCGTCTCTCAAAGTCCAGCATCAAGGCTGTTCCACGAGCCAAACTTCAACGTCTAGCTGTA CTGGGTTGCAAGACCAAGTTGCCCCTGGCTTCTCCAGTCTCCAGGTTGTAGTCAACGACGGCAATAAAAACAAGGAGAAACACATGAAGTGGGTCCCAAC AACCGTCAACCTCAAAAACCACGTCATCGTCCCAGACGTAACCAGTCAATCTTCCCCACCTCTGCCGCCGCTGTAG
AA sequence Show only first row Show all	>Lus10030256 pacid=23153113 polypeptide=Lus10030256 locus=Lus10030256.g ID=Lus10030256.BGIv1.0 annot-version=v1.0 MEEVGLRWRRGTKSSLKVQHQGCSTSQTSTSSCTGLQDQVAPGFSSLQVVVNDGNKNKEKHMKWVPTTVNLKNHVIVPDVTSQSSPPLPPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030256 [exp]	0	1
AT2G37370			unknown protein		Lus10009063 [exp]	5.3	0.8564
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	6.6	0.8454
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	6.9	0.8081
					Lus10002304 [exp]	8.8	0.8353
					Lus10027520 [exp]	9.8	0.7745
AT2G37370			unknown protein		Lus10025285 [exp]	11.7	0.8029
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	17.2	0.8068
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	20.5	0.7527
					Lus10003753 [exp]	21.2	0.7527
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	21.9	0.7527

Compare expression of checked genes

Lus10030256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.