Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 177 / 5e-52 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 175 / 5e-51 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 169 / 1e-48 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 157 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 157 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 152 / 8e-43 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT5G53380 147 / 1e-40 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 146 / 2e-40 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 143 / 3e-39 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004008 [exp] 367 / 3e-125 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 191 / 4e-57 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 97 / 2e-22 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 77 / 2e-16 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10019840 [exp] 76 / 4e-16 AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1) Lus10002836 [exp] 62 / 1e-11 AT5G53390 96 / 2e-23 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 54 / 4e-08 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 54 / 6e-08 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 54 / 8e-08 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014200 [exp] 201 / 5e-61 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 181 / 2e-53 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 168 / 2e-48 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 112 / 6e-28 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 71 / 1e-13 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 68 / 8e-13 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 66 / 7e-12 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 64 / 3e-11 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 50 / 1e-06 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 46 / 1e-05 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030257 pacid=23152970 polypeptide=Lus10030257 locus=Lus10030257.g ID=Lus10030257.BGIv1.0 annot-version=v1.0 ATGTCCCTTCTCTTAGTCTGCACCCGCCAGATGTCCGACCCGGAATCTTTACCCACCATCCCCACCCGGAAGATTAAGAAGCAGGAGGGAGGGCGAGGAT TTAAGCAACGGCCGCGCTTTGCGGAGGGTGACGTGGAGGATGGTGTTGAGAGCTTGGATGATGACTGGGCTGATGTGGAACACGGCGGTGGATGTGCTAG CTTTTTTTTAACGGCGATCGGATTGAAGACGGATACGGAGACGCCGTTAATGGGGCCTCATGGGGTTGAGCATTTGCCCAGGAGGTTTGTTTGGAGGACC GTTAGTTTGGATGACTTCAAGTTCGTTAAGAATGCTATGGACGCCACGATAAATGATGTTGCTCTTGGAGCTACCCAAGCTGGATTGTCTCGCTATCCCA ACAGAAAATTTGATATGACGAAAAAAGATATGGAAGTGAAGTGGGAGAATTGGATAGGATTCATATTGCTTCCTTTCACAATAGGAAGCAAAGATGACCC ATTAGACTATGTCCGTGAAGTCAAAATTATCGTAGACAGAAAGAAGCGTTCACTCGGAGCTCTCTTCACTTTCTCCATTGCAGAGATAGTCCTCAAGCTT TTTGGGATCAAAGTTAAGCTTTTACTTTTGTGTACATTTTTGCAGAGATCAAATGAAAAGTCCCATAGAATTATAACAAAGACAACAACACTATGCTTCA CTAATCTGGTTGGACCATTGGAAGACATTGTGTTCTATGGGCACCCTTTGTCATTTCTTGCCCCTAGGTCTTTCAACCAGCCTCATGGGCTGATGATAAA CTTCCAGAGCTGTGTAGACAATAGGCTGTACTTAGATGCATCCATCGACAATAAATAA
AA sequence Show only first row Show all	>Lus10030257 pacid=23152970 polypeptide=Lus10030257 locus=Lus10030257.g ID=Lus10030257.BGIv1.0 annot-version=v1.0 MSLLLVCTRQMSDPESLPTIPTRKIKKQEGGRGFKQRPRFAEGDVEDGVESLDDDWADVEHGGGCASFFLTAIGLKTDTETPLMGPHGVEHLPRRFVWRT VSLDDFKFVKNAMDATINDVALGATQAGLSRYPNRKFDMTKKDMEVKWENWIGFILLPFTIGSKDDPLDYVREVKIIVDRKKRSLGALFTFSIAEIVLKL FGIKVKLLLLCTFLQRSNEKSHRIITKTTTLCFTNLVGPLEDIVFYGHPLSFLAPRSFNQPHGLMINFQSCVDNRLYLDASIDNK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10030257 [exp]	0	1
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	5.1	0.8613
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	7.5	0.8488
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	10.8	0.8448
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	14.5	0.8358
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	14.6	0.8399
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	16.8	0.8350
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	18.5	0.8339
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	19.4	0.8114
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	23.5	0.8288
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	23.9	0.8192

Compare expression of checked genes

Lus10030257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.