Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01320 153 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004009 [exp] 347 / 6e-111 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10020453 [exp] 256 / 2e-84 AT1G01320 135 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170900 [exp] 186 / 1e-54 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G098600 [exp] 184 / 6e-54 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030258 pacid=23153062 polypeptide=Lus10030258 locus=Lus10030258.g ID=Lus10030258.BGIv1.0 annot-version=v1.0 ATGATGCGACCACTGTCCTTCATGTACCCACCTTACAGTCAAGCTCAGGGAATCCCACCGAGTACTTATCCCATCACCAGCACTGCATTCCATCCAAGTC ATTACTCTTGGCAGTGCAATGTGAGCCGGAACGTGCCGGAGTTTGTTCCTACCACGATGTGGCCCGGTTGTCACATGGTGGAGTTCCCTCCTGCCCCGTC ACCTGTTATGGATCCCGTTTCCGATCCTGTACTGGACCATAATGAGATATCGGAGAGTCCTGACTCGTTCCTGCCGGCCGATATTGTCAATGTAACTGAT TCTGACAAGGACGCGAGTCTTCCGGTGGAAGAAAATGGTCGTTTGAACTTGTCCGGTGTCGACACTTCTACTAGCAACGACATGAAAGAGAACTCGGCTG ATGGGGAGAGAACTTTCAGCATTTTGATAAGGGGAAGGAGAAACAGAAAGCAAACGCTGAGAATGCCGATAAGTTTGCTCAATAAGCCGTATGGCTCGCA GTCTTTCAAAGTTGTTTACAACAGAGTAGTGAGAGGTAGTGAGTCTCCAAAGCAGACTGCTGTTTCTTCAACTGGTTAG
AA sequence Show only first row Show all	>Lus10030258 pacid=23153062 polypeptide=Lus10030258 locus=Lus10030258.g ID=Lus10030258.BGIv1.0 annot-version=v1.0 MMRPLSFMYPPYSQAQGIPPSTYPITSTAFHPSHYSWQCNVSRNVPEFVPTTMWPGCHMVEFPPAPSPVMDPVSDPVLDHNEISESPDSFLPADIVNVTD SDKDASLPVEENGRLNLSGVDTSTSNDMKENSADGERTFSILIRGRRNRKQTLRMPISLLNKPYGSQSFKVVYNRVVRGSESPKQTAVSSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	0	1
AT5G19540			unknown protein		Lus10034912 [exp]	3.5	0.9126
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	3.5	0.9331
AT3G51510			unknown protein		Lus10034765 [exp]	4.0	0.9232
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	5.7	0.9297
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	6.2	0.9263
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	7.5	0.9139
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	8.9	0.9214
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	9.5	0.8911
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	10.9	0.8998
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10009619 [exp]	11.5	0.8991

Compare expression of checked genes

Lus10030258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.