Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01320 1650 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G28080 1155 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15290 1115 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G52140 333 / 5e-94 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004009 [exp] 2335 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 1165 / 0 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036604 [exp] 822 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020453 [exp] 352 / 8e-109 AT1G01320 135 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037481 [exp] 328 / 6e-92 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 322 / 5e-90 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098600 [exp] 1678 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G170900 [exp] 1665 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G180100 [exp] 1181 / 0 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G102500 [exp] 1174 / 0 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031000 [exp] 1145 / 0 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G271200 [exp] 323 / 2e-90 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.009G065300 [exp] 321 / 7e-90 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030259 pacid=23152984 polypeptide=Lus10030259 locus=Lus10030259.g ID=Lus10030259.BGIv1.0 annot-version=v1.0 ATGGATATCACCGTCAACCTTCCCGACGATACTCATGTTATTCTCAAGGGAATATCAACGGACAGAATTATAGACGTTCGTCGTCTTTTGTCCGTCAACA CGGAAACTTGCTCCGTCACTAATGTCTCCTTTACTCATGAGGTTAGAGGCCCGCGGTTGAAAGATACGGTCGACGTTACGGCTCTCAAGCCTTGCGTCCT CACTTTGATTGAAGAGGATTACGATGAAGGTCTTGCCGTCGCGCATGTCCGCCGGCTATTGGACGTCGTCACCTGTACGACCTGGTTCGGTCCTTCGGAC GCTGGCGGAAAGAATGGGGCGAGCAAGAAGGCCGGCTATTGGACGTCGTCGCCTGTACGACCTGTTATTAGGAAGGAGGATAAGCGGAAGGTGGATGAGA TTTCAGCTGAGGATCACCTGTTTTCTCTGGATGTGAAGCTTTGCAATGGAAAGCTGGTCCAGGTGGAAGCTTGCAGGAAAGGATTCTTTAGTGTAGGGAA ACAGCGGATTCTTTGCCACAGTCTTGTGGACTTGTTGCGACAGCTTAGTAGAGCCTTCGACAATGCTTATAATGAGCTCATGAAAGCATTCTCCGACCGC AACAAGTTTGGGAATCTTCCTTATGGATTCAGAGCAAACACATGGCTTATCCCTCCTGCTGCTGCACAAGTGCCGTCATCTTTCCCGCCTCTTCCTGTTG AGGATGAGAAGTGGGGAGGCAACGGAGGTGGTCTTGGTAGAGATGGGAAACAAGATCAGATACCTTGGGCTGATGAATTTTCATATCTTGCATCCATGCC TTGCAAGAATGCAGAGGAAAGGCAGGTCCGAGACAGGAGGGCGTTCCTTCTCCACAGCCTATTTGTTGACATTGCCATTTTCAGGGCCATGAACGCTGTA CAGTTAGTAAGTGAAAAGAAAGAGTTACCTGGTTCAATTAACAATTCTGAAGGTCTATACACAGAGAGAGTAGGGGATTTGATAATTATGATTGTGAAAG ATGTTTCCAATGCGAGCTCAAAGATGGACACTAAGATCGATGGAAATCAAGCAGCCGGGGTAGACAAAACAAATTTAATGGAAAGAAACTTGCTGAAGGG TATAACGGCAGATGAAAATACTGCTGCACATGATATTGCCACACTTGGCACTGTGAATGTGAGATACTGCGGTTACGTTGCTACTGTCAAAGTTCAGGAA AGAAGGGAGAGTAAAGTCACATCTCAAAGGGTTGAACTTGAACAGCCCGACGGAGGAGCCAATGCCCTTAATTTTAGCAGTTTGAGACTGCTACTTCACA AAACACCACCTTCAGAGCACAGCAAACTAGATTTGTCCTCACGAGCTACAGAACAGGAAGAGTTCAATGCTTCCCAGGGTTTTGTAGAGAGACTATTGGA AGAAAGTATTTTACAACTTGAAGAAGAGGAAGCAGAGCAAGTTCCTTTCGTACGGTGGGAGCTTGGAGCATGTTGGATACAACATTTGCAAGATCAGAAG AACGCAGATAAGGATAAGAAACCTTCTGATAAGAATAAGAAATCTTCCACAGAAAAGGAAATAAAGGTTGAGGGACTTGGTACGCCTCTTAAGTCTCTTA AGGCAAAGAAAAAAATGGATGAAAACGAAAAACCAAGAGTCTCTGCTAATGGTGTAGTGGGGGAACTCGAGGATTCTGCTTCTCCAATGTGTCAGCTTGA AAGTTCGGCAAATGATGAGCTTTCGCTACAGAGGATTTTGTCGGACACGGCTTTTGCTCGACTGAAGGAAACAGACACTGGACTTCATTCTAAGGTAATA TCCAAGATTGGTACGGTTGGCGGCTCCCTTCTTGAGTCTTTGCCAGAATTGATCGACTTGTCTCAGAAATATTACACTGAGGTAGCTCTTCCAAAATTGG TTGCAGATTTTGGTTCTCTCGAACTTTCTCCAGTTGATGGCCGGACTCTAACTGATTTTATGCACACTAGAGGTCTTCGTATGCGTTCACTGGGACGTGT TGTCAAGCTTTCAGAGAAGTTATCACATGTACAGTCGCTTTGCATTCATGAGATGATTGTACGAGCCTTTAAGCACATTATCCAGGCGGTCATTGCAGCT GTGGCTGATCATGATAAAATGGCTGTATCGGTAGCTGCTGCTCTAAATCTCATGCTCGGAGTACCTGAAAATCAAGATTCCAAGGCTTCCCATGTCCATT CTCTTGTATGGAGATGGCTAGTGTTATTTCTAAGAAAACGATTTGATTGGGAACTTAGCATCCCAAACTTCAAAGATGTCCGAAAATTTGCTTTGCTTCG TGGATTGTGCCACAAGGTGGGTATTGAGTTGGTTCCAAGGGATTTTGACATGGATTCTCCATACCCATTCCAGAAATCAGATGTTGTCAGCCTTGTCCCA GTGCATAAGCAAGCAGCATGTTCCTCTGCAGATGGAAGGCAGCTTTTGGAATCGTCAAAAACAGCCTTAGATAAAGGAAAACTTGAAGATGCTGTAACAT ATGGTACAAAGGCACTTGCAAAGCTGGTAGCCGTTTGCGGTCCTTACCATAGAATGACTGCAGGAGCTTACAGCCTTCTTGCGGTTGTACTATATCACAC CGGCGACTTCAACCAGGCCACTATATATCAGCAGAAAGCACTGGATATCAATGAGAGAGAATTGGGACTTGATCACCCAGATACCATGAAGAGTTATGGA GATCTTGCTGTCTTCTATTACCGACTCCAACACACTGAGCTGGCTCTTAAGTATGTGAAGCGTGCCCTGTACCTGTTGCATCTGACATGTGGTCCATCAC ACCCAAATACTGCTGCGACATACATAAATGTGGCTATGATGGAGGAAGGGCTGGGAAATGTGCATGTTGCCCTTCGATATCTTCATAAGGCTCTAAAGTG CAACCAAAGGTTGCTTGGCCCAGACCACATTCAGACGGCAGCAAGTTACCATGCAATTGCAATCGCACTGTCATTGATGGAAGCATACCCCTTGAGCGTA CAGCATGAACAAACAACTCTACAAATTCTCCGAGCAAAGCTGGGTCCAGATGATTTGCGTACTCAGGATGCTGCTGCTTGGCTTGAGTACTTTGAGTCGA AAGCATTTGAGCAGCAAGAAGCTGCACGGAATGGTACAAAAAAGCCAGATGCATCAATTGCTAGCAAGGGGCATCTGAGTGTATCTGATTTACTAGATTA TATCAATCCGAGCCAGGATCCGAAGGGGAGAGAAGCAGCAGCTAAAAGAAAAAGCTACTTGACAAAGGTAAAGGGTAAAGCTGAACCAGAACCCATTATT CCAAGTTTCCCTGAATCTCCAAAAGAGAAAGTCGAAGAAGCAGCTGATCAAGACCCAGTTATTCCAATTGTCAAAGAAGAACTCAGTTTGATGGAGAATG AGAATGAACAACCGGACTCGGAAGGAACTGTAGATGAAAAATCAGTTATGAAAGAGGAAATATTACATGAAACACCTGCCGAAGGAGATGATGGATGGCA ACCGGTTCAAAGACCCAGATCAGCTGGCTCTAATGGTCGACGAAGGAAACAACGTCGGGGTATCATAGGCAAAGTATATGTTCATACAAAAAAGGCTACG GATGCTGAAGTGGACTATGCTTCGGCCAAGAGCACCCTTCAGAGTACTAAGCATTACATTGTAAAGAAACGACCTATCTCTCAGGGAACTTATGCAGACC AACAAGGTGCACTTCCTTCTCAGCCAGCCAAGTATGGGCGGAGGATCACAAAAACTGTAGCATATAGAGTCAAATCTGTTCCTTCGCCTGATAAAAATGC TGCTGCCTCCGAGACTTCTGAACAAGTGGGCAAAGTTTTCTCCTCTGCAACAGAATCTGTTACAATTTCTGCTCCAAGTGAGGGTAACTCGTTAAAGAAT CAAATGGTTAGCTTGGGAAAGTCCCCATCATACAAGGAGGTCGCATTAGCGCCACCTGGTACTATCTGGTCACCTGTTTCGGATAATGAAGATAAACCAG TTACTGGTGTTCATAACCATGACGAGACACATGAAGCTAGGGAAATTGCTATTCCAGATGTATTCGAGAAGAACACAGAAAATGCATCAATCGACTTGGT AGAAGATAGGTTGACGACACCCTCCAGCTTGCAAGAATCCAGGTCTACTCTTTTAGATCATGAAGAAAACGACATATTGACAGATGGTTCGATCGATATA CCGGAAGCATACCAGAATAATCAGATTTCAGACAACATTCGGAAGATGAAGTTGCTATCCTTGAAAATATCCTTGAAAACAAAGAAGAAAGCCACCCTAT CAGTGAAAGAGAAAGCTCAGGTCTTGAAGGTAATTCTGATTCCTCATTTCTGGGAGAAGATCTGA
AA sequence Show only first row Show all	>Lus10030259 pacid=23152984 polypeptide=Lus10030259 locus=Lus10030259.g ID=Lus10030259.BGIv1.0 annot-version=v1.0 MDITVNLPDDTHVILKGISTDRIIDVRRLLSVNTETCSVTNVSFTHEVRGPRLKDTVDVTALKPCVLTLIEEDYDEGLAVAHVRRLLDVVTCTTWFGPSD AGGKNGASKKAGYWTSSPVRPVIRKEDKRKVDEISAEDHLFSLDVKLCNGKLVQVEACRKGFFSVGKQRILCHSLVDLLRQLSRAFDNAYNELMKAFSDR NKFGNLPYGFRANTWLIPPAAAQVPSSFPPLPVEDEKWGGNGGGLGRDGKQDQIPWADEFSYLASMPCKNAEERQVRDRRAFLLHSLFVDIAIFRAMNAV QLVSEKKELPGSINNSEGLYTERVGDLIIMIVKDVSNASSKMDTKIDGNQAAGVDKTNLMERNLLKGITADENTAAHDIATLGTVNVRYCGYVATVKVQE RRESKVTSQRVELEQPDGGANALNFSSLRLLLHKTPPSEHSKLDLSSRATEQEEFNASQGFVERLLEESILQLEEEEAEQVPFVRWELGACWIQHLQDQK NADKDKKPSDKNKKSSTEKEIKVEGLGTPLKSLKAKKKMDENEKPRVSANGVVGELEDSASPMCQLESSANDELSLQRILSDTAFARLKETDTGLHSKVI SKIGTVGGSLLESLPELIDLSQKYYTEVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGRVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVIAA VADHDKMAVSVAAALNLMLGVPENQDSKASHVHSLVWRWLVLFLRKRFDWELSIPNFKDVRKFALLRGLCHKVGIELVPRDFDMDSPYPFQKSDVVSLVP VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV QHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTKKPDASIASKGHLSVSDLLDYINPSQDPKGREAAAKRKSYLTKVKGKAEPEPII PSFPESPKEKVEEAADQDPVIPIVKEELSLMENENEQPDSEGTVDEKSVMKEEILHETPAEGDDGWQPVQRPRSAGSNGRRRKQRRGIIGKVYVHTKKAT DAEVDYASAKSTLQSTKHYIVKKRPISQGTYADQQGALPSQPAKYGRRITKTVAYRVKSVPSPDKNAAASETSEQVGKVFSSATESVTISAPSEGNSLKN QMVSLGKSPSYKEVALAPPGTIWSPVSDNEDKPVTGVHNHDETHEAREIAIPDVFEKNTENASIDLVEDRLTTPSSLQESRSTLLDHEENDILTDGSIDI PEAYQNNQISDNIRKMKLLSLKISLKTKKKATLSVKEKAQVLKVILIPHFWEKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	2.8	0.9173
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	3.2	0.9142
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	4.1	0.9303
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	4.6	0.9038
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	4.9	0.9035
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10017357 [exp]	5.1	0.8790
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	5.2	0.9216
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	6.5	0.9300
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010771 [exp]	6.5	0.9057
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	8.1	0.8839

Compare expression of checked genes

Lus10030259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.