Plant FIBer expression Database

Lus10030260 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71760 135 / 4e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004010
[exp]
168 / 6e-53 AT1G71760 52 / 2e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G062800
[exp]
145 / 5e-43 AT1G71760 183 / 6e-57 unknown protein
PFAM info
Representative CDS sequence
>Lus10030260 pacid=23153195 polypeptide=Lus10030260 locus=Lus10030260.g ID=Lus10030260.BGIv1.0 annot-version=v1.0
ATGTCCTCCCCCGTCTTTATCGCTGTTCAGTGTTGCCAGTGCTCGACTATGCAGGCGAAGCAGAATAAGAAAAGCAGCAATAAATGGACCTGTGTTGTAT
GCAACCAGAAGCAATCGGTTATCAAAGTCTTCGCCCAGAGCTACATGGCCAAGGAAATTCGCCAGTTCGTTCAATCCTTCAATATGTCCCGCAAATATGC
CGATGAACAGGCGTGTCTGGAAGAAGAGCACGAAGTGACTCAGGACGAGGAGCCTAGGGCTCCCGCTAGTAGGAAGAGGCGAATTGACTGGAGCGAATAC
CTAGATCCAGCTGACTACGAACCTCAGGAGACCGTGGAAGACGGAAATGAAGGAGGAGATGTTATGGTGAGTACAGAGATGCCTAAGATAGCCGGGTTAA
GGAATGGAGCTTATAGGGACAGTGATGGAGACGGTAGCCGATCTCGAAATCATGCTTCTCTGAAGAAGAAGATCTCTAAAGAAGATCTAGTGAAGACAAC
TCAGGGAGGGGCAATGAAGCTTGAACCTAAAGAGTTTGTTGACATTGAGAAATTGACTCATTCCAGTTCAAAATGCAACAAGGAGACAAGGACCTGTCAA
CTACCGGTCACTACAAAGGCATCGATGTGGGATGAGTACATAAACAACGATGAAGATGAATGGTAG
AA sequence
>Lus10030260 pacid=23153195 polypeptide=Lus10030260 locus=Lus10030260.g ID=Lus10030260.BGIv1.0 annot-version=v1.0
MSSPVFIAVQCCQCSTMQAKQNKKSSNKWTCVVCNQKQSVIKVFAQSYMAKEIRQFVQSFNMSRKYADEQACLEEEHEVTQDEEPRAPASRKRRIDWSEY
LDPADYEPQETVEDGNEGGDVMVSTEMPKIAGLRNGAYRDSDGDGSRSRNHASLKKKISKEDLVKTTQGGAMKLEPKEFVDIEKLTHSSSKCNKETRTCQ
LPVTTKASMWDEYINNDEDEW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71760 unknown protein Lus10030260
[exp]
0 1
AT3G54560 HTA11 histone H2A 11 (.1) Lus10018753
[exp]
2.0 0.9566
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Lus10028044
[exp]
2.8 0.9538
AT3G51290 Protein of unknown function (D... Lus10028431
[exp]
3.5 0.9502
AT5G62710 Leucine-rich repeat protein ki... Lus10033104
[exp]
3.9 0.9464
AT3G20260 Protein of unknown function (D... Lus10033354
[exp]
5.3 0.9468
AT3G07800 Thymidine kinase (.1) Lus10012347
[exp]
7.7 0.9346
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10021408
[exp]
7.7 0.9419
AT3G51290 Protein of unknown function (D... Lus10041884
[exp]
8.8 0.9335
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10013544
[exp]
8.9 0.9405
AT1G51060 HTA10 histone H2A 10 (.1) Lus10032464
[exp]
10.1 0.9276

Lus10030260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.