Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61740 721 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 320 / 2e-92 SET29, ATX5, SDG29 SET domain group 29 (.1) AT5G36000 295 / 2e-90 unknown protein AT3G61730 291 / 4e-89 RMF reduced male fertility (.1) AT4G27910 308 / 4e-88 SDG16, ATX4 SET domain protein 16 (.1) AT3G62500 123 / 5e-30 unknown protein AT1G05830 123 / 3e-28 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 120 / 3e-27 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT5G42400 112 / 1e-24 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 91 / 2e-18 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004012 [exp] 929 / 0 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10012626 [exp] 909 / 0 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 863 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 584 / 0 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10004013 [exp] 502 / 6e-170 AT5G36000 271 / 3e-90 unknown protein Lus10012627 [exp] 416 / 8e-136 AT5G36000 337 / 5e-115 unknown protein Lus10010122 [exp] 304 / 3e-93 AT5G36000 271 / 2e-88 unknown protein Lus10019026 [exp] 303 / 6e-86 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10035747 [exp] 121 / 6e-31 AT5G36000 97 / 5e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170600 [exp] 794 / 0 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 778 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 593 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 577 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G098300 [exp] 348 / 1e-110 AT5G36000 369 / 5e-128 unknown protein Potri.018G023000 [exp] 126 / 6e-29 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 124 / 2e-28 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 123 / 4e-28 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 119 / 6e-27 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 115 / 8e-26 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0049 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10030262 pacid=23153167 polypeptide=Lus10030262 locus=Lus10030262.g ID=Lus10030262.BGIv1.0 annot-version=v1.0 ATGACAATGAAAACGGAAGTCCAGGTGCCGAACTTCAGACTCTGCCAGTTGGAAGAACCCTTCGTCGGAAATGAAGACGGCGGAGAAGAAGAAGAATGCG GATACAGCTACACTCCAAAGAGGCAGAAGATCGACGAGGACAGTTCAAATGGGCGAATGAGAGTCCATGACGAGAATGTCTTTGTAGCAACTGAGTTCAC TTCGAATTCAAAGTCATCAAAGAATCAGAAGCTGAATCGGCCTCGGCCTCAGCCTCCATCTCCACCTCAGGTAATCAAATCATCCCGAGGAAGAATCAGC ATTCTTCCTTCCAAGTTCAACGACTCCGTTGTCGAATCGTTGACCAACAGAAACAGTAGGTTCGCCGTCACTGAGAATGAAGGTTCCGTTAAAATGACGA AGAGTTACGGTAATATACCTCGGCCGCCGTTAAAGGAACGTAACGGCTTGAATAAAACTGAGAAAACTCGTATTACTAATAAAGACGTCTATAGGCCGGA GGACTTCGGCGTTGGAGATGTAGTTTGGGGGAGGTGTGGGAAGAGATACCCTTGGTGGCCAGCTGTAGTGATCGATCCTATTTTGCAAGCTCCTGAAGCT GTTCTCAATTGCTGCGTCCCTGGCGCTCTGTGCGTCATGTTTTACGGCCATTCCAAGAACGGAACGCAAAGGGATTATGCATGGTTGAAACAAGGGATGC TCTTCCCTTTTGCGGACTTCATGCATAAATTTCAGGGGCAGACTCAAATGTTCAAATGCAAGATGAGTAACTTTCAAATGGCATTAGAGGAGGCGATGCT GGTTGAAAGTGGCATCCTTGATGCAGATACTGGTGCTGCTATGTCTGTAGTTAATGAAGCCCACTCGAGAGAATTCAAGCATACTAGTAGTTCAAGCCAA GATCAAGATTCGTCCCACCAGGCAAGTGTTTATTGGAACCATTGTCGGGGTGTACGTTTGAAGGAGATGAAATGCTGTGATGGCTGTAATCTGATGTTGC CATGCAAAGTCGTGAAGGACCGGCAGGGTTCAACGTGTAAGACTGAGCTTTTGTGTAAACACTGCGTCAAGTTATCCGTCTTGCAGTTAAGGAAATCGAA CCAGTATTGTGGGATATGCAAGAAGATTTGGCACCATTCCGATGAAGGGAATTGGGTCTGCTGTGATGGTTGTAATGTTTGGATCCATGCTAACTGTGAC AACATATCCAATAAGCTTTTCAAGGATCTTGAAAACCGTCAATATCATTGCCCTGATTGCAAGAAGTTTGAAGTCCAGCCATTAAATTGCAAGAAAATGA CGCTACCAGTCAAGTCTACTCTAAGCATTGAAGAAGCAATGCCACCTGAGAAAGTAACTGTTGTGTGCAACGGGATGGAGGGTACATATTTCCGGAAATT TCATTCAATTGTATGCAACTGTGGGTCTTGTGGATCAGGGAGGCAAACTCCCAGTGAATGGGAAAAGCACACTGGATGCAGAGCTAAGAAATGGAAGTGT AGTGTCAAAGTGAAGGATACGCCGTTACTGCTCGAAAAATGGGTTGGTGTCTTTCCTTTCCTGCTGCTTGATTACTGGTTTCTGTTATCAGAACTGGGGT TGCTTGTTCCCCAAGTTTATTTATTGCTTTGCTGCCTGATGAACTCCTTGCAGATTGCTGGCTACACTGTGCATGATTCGAATCCTCTGGATATAGATAA GCAGAAGCTATTGACCTTTTTGCAAAGAGGTGCTTTAAAGCCCACAGATGTTGATAGTCTTTGGGTTCATATCACTTGTGCATGGTTTCATCCTCAAGTT GGTTTCTTGGATCATGAGAAGATGGAACCTGCTACTGGGTTTTTCCGAATCCCTCCAGCTACGTTTTTGAAAGTGCACTGTGGTGTGAAAAATGGGAAAG AAGAAACCAAGAACTTAATATACTGTGCTGTTCACAGGTCCCCAAACCCGGATTCAGCTGTAGCTGTGCGAACTCCTGAGGGAATTTCGGCTACCAAAAG GTTACTGCAAAATCAGAATGAGTTCCTCCAGGGTTCGAGACTGATGCCATCTAAGATAACTGAACTTTCTGAACTCTCAACCTTGGGGACTGATGATGAG CTTGAGTCTCTTTCTGCTGCAAGATGTCGTGTTTTCAAACGAACAAACAATAAGAAAACTGAAAAGACTCGAATTTGTCTTGGAAAATCTGGCATACATG GATGGGGATTGTTTGCTCGGAGAAACATTCAAGAGGGTGAGATGGTTGTTGAATATCGGGGAGAGATTGTTAGGCAGACTGTTGCTAACCTGCGGGAGGC TAAGTACAGGTCGCTAGGCGAAGACTGTTACCTGTTCAAGATCAGTGAGGACATGGTAATTGATGCCACAAACAAAGGGAACATAGCACGCTTAATCAAC CATTCAGCTCATTCTATGATTCGTTCTCTGTTGGACTTACAGTGCACCCCGAACTGCTTTGCAAGGATAGTGAGCGTTGGCGGTGTGGAGAATCGTGTAG TGCTCATGGCGAAGAGAGACATTTCGGTGGGATCGGAGCTGATGTATGACTACTTGTTCGAAGCAGACGAGCCAGATGAGCAGAAAGTGCCTTGCCTGTG TGGAACTACAGGTTGCAGGAACCACGACGGCAAGCTCGTCCCCCGCCCCCTCGACGGCAAGCTCCGCTACCACGGAGGGAAAACCCAAGTCCTCACGGTC AACCGTTACGAACTGGATGCGTGGACCGAGATCGCCAAGTTTCTGGACGCTAAATCTATGATGAGGCTCGGATTGACGTGCTGGTGGTTCCATGGCGTTA TTATGATGCAAGAAAACTTATGGAAGTCTGCTTGCTTGAGCCATCTTCAAGTTCCAGCTCCAGAGCGTACGGGATTCAAATGGTTTGATCTCTACGCTTC GGCAATCAATGGAAGCCATTCTTACACATTCCGAGATACGGAGAAGCATCTTGAATGGATGAGGGTTGGTGCCTTTTTCCTTGACTCGGCATCAGCAATC CTTACCCAAAGACTCACTTTACCGCTGAAAATCAAGAAACGTGACCCTCTGGAGACCATGTTGGCATCAAATGGAGCTTGTTTGCTAACTGACCTTAGAA AAGGAATCTGGATAGCAGATTTACAGCTTCTTGGATGCTCAGTTTGCGAAAGCAATGCTTGCGAAGGAACAATGCAAACACTCGATGCGAGGCACTTCGA ATTGTTCCTCAGTGAAGGATACCAGAATGGCAGTTGGGTGTATGATCAGATAGGATCATACGAAGTTAAAGAACAAACTAATGCAGCGTCTGCGGCCATG TTAGACATCAAGCACATCACAGACCCTGAAACAGCTGATGTTTTCAATTCCAAACTCTGGGACGAAACACCCAACGTTTCCCATCCAAAAGCTATGATCA GTTACCACCATGTTGCAATTAGCACCCACTTAGAAAAGAATAAAGGACTTGTTTCAAAGTACTATGTGATGAGAGCTGGAACTGGTGGAGAAGTTGTTTC CGTCAGAATTTCTCAGCAACTCCTGTAA
AA sequence Show only first row Show all	>Lus10030262 pacid=23153167 polypeptide=Lus10030262 locus=Lus10030262.g ID=Lus10030262.BGIv1.0 annot-version=v1.0 MTMKTEVQVPNFRLCQLEEPFVGNEDGGEEEECGYSYTPKRQKIDEDSSNGRMRVHDENVFVATEFTSNSKSSKNQKLNRPRPQPPSPPQVIKSSRGRIS ILPSKFNDSVVESLTNRNSRFAVTENEGSVKMTKSYGNIPRPPLKERNGLNKTEKTRITNKDVYRPEDFGVGDVVWGRCGKRYPWWPAVVIDPILQAPEA VLNCCVPGALCVMFYGHSKNGTQRDYAWLKQGMLFPFADFMHKFQGQTQMFKCKMSNFQMALEEAMLVESGILDADTGAAMSVVNEAHSREFKHTSSSSQ DQDSSHQASVYWNHCRGVRLKEMKCCDGCNLMLPCKVVKDRQGSTCKTELLCKHCVKLSVLQLRKSNQYCGICKKIWHHSDEGNWVCCDGCNVWIHANCD NISNKLFKDLENRQYHCPDCKKFEVQPLNCKKMTLPVKSTLSIEEAMPPEKVTVVCNGMEGTYFRKFHSIVCNCGSCGSGRQTPSEWEKHTGCRAKKWKC SVKVKDTPLLLEKWVGVFPFLLLDYWFLLSELGLLVPQVYLLLCCLMNSLQIAGYTVHDSNPLDIDKQKLLTFLQRGALKPTDVDSLWVHITCAWFHPQV GFLDHEKMEPATGFFRIPPATFLKVHCGVKNGKEETKNLIYCAVHRSPNPDSAVAVRTPEGISATKRLLQNQNEFLQGSRLMPSKITELSELSTLGTDDE LESLSAARCRVFKRTNNKKTEKTRICLGKSGIHGWGLFARRNIQEGEMVVEYRGEIVRQTVANLREAKYRSLGEDCYLFKISEDMVIDATNKGNIARLIN HSAHSMIRSLLDLQCTPNCFARIVSVGGVENRVVLMAKRDISVGSELMYDYLFEADEPDEQKVPCLCGTTGCRNHDGKLVPRPLDGKLRYHGGKTQVLTV NRYELDAWTEIAKFLDAKSMMRLGLTCWWFHGVIMMQENLWKSACLSHLQVPAPERTGFKWFDLYASAINGSHSYTFRDTEKHLEWMRVGAFFLDSASAI LTQRLTLPLKIKKRDPLETMLASNGACLLTDLRKGIWIADLQLLGCSVCESNACEGTMQTLDARHFELFLSEGYQNGSWVYDQIGSYEVKEQTNAASAAM LDIKHITDPETADVFNSKLWDETPNVSHPKAMISYHHVAISTHLEKNKGLVSKYYVMRAGTGGEVVSVRISQQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	0	1
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	2.0	0.9660
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	2.8	0.9687
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	4.9	0.9660
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	5.3	0.9655
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	6.9	0.9612
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10003777 [exp]	7.1	0.9376
					Lus10026146 [exp]	7.5	0.9473
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	8.7	0.9641
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	9.0	0.9532
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	9.2	0.9588

Compare expression of checked genes

Lus10030262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.