Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 76 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT2G28085 56 / 6e-11 SAUR-like auxin-responsive protein family (.1) AT5G20810 46 / 6e-07 SAUR-like auxin-responsive protein family (.1.2) AT2G46690 45 / 1e-06 SAUR-like auxin-responsive protein family (.1) AT4G00880 44 / 4e-06 SAUR-like auxin-responsive protein family (.1) AT1G19840 43 / 9e-06 SAUR-like auxin-responsive protein family (.1) AT3G43120 42 / 3e-05 SAUR-like auxin-responsive protein family (.1) AT2G37030 41 / 3e-05 SAUR-like auxin-responsive protein family (.1) AT1G75590 41 / 4e-05 SAUR-like auxin-responsive protein family (.1) AT4G38860 40 / 9e-05 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004014 [exp] 219 / 4e-75 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 177 / 5e-58 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 174 / 5e-57 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10023012 [exp] 129 / 3e-39 AT3G09870 97 / 5e-27 SAUR-like auxin-responsive protein family (.1) Lus10001398 [exp] 129 / 7e-39 AT3G09870 97 / 9e-27 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 62 / 3e-13 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 60 / 2e-12 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10016129 [exp] 60 / 6e-12 AT2G28085 115 / 4e-34 SAUR-like auxin-responsive protein family (.1) Lus10016130 [exp] 59 / 7e-12 AT2G28085 111 / 2e-32 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092400 [exp] 124 / 2e-37 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 117 / 8e-35 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 60 / 3e-12 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 49 / 5e-08 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 47 / 3e-07 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 45 / 1e-06 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 44 / 2e-06 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 42 / 1e-05 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 42 / 3e-05 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.006G137200 [exp] 42 / 3e-05 AT5G20810 201 / 1e-66 SAUR-like auxin-responsive protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10030263 pacid=23153037 polypeptide=Lus10030263 locus=Lus10030263.g ID=Lus10030263.BGIv1.0 annot-version=v1.0 ATGTCTAGCAATGACGAAAGCATCCGAGGCTTGATGCTGCTGAAGCTCTTCACAAGGAAGCTGCAAAGGACACTGATGATGATGACATCCAGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGGCACAACCTGCAGAAAAGAAGTGGAGAGTTTGAAGAAGATGAACAGGGAATGAAAGTTGTACCAGGTGATGTGAAGAG AGGGCAGTTTGCAGTTACAGCAACCAAAGGTGGGAAACCAAAGAGATTCATCGTCGAGTTGGATGACCTGAACGATCCGGATTTCCTCAACTTGCTTGAA CAGGCTGAGGACAAGTTCGGGTTCCGGCAGGAAGGTGTACTTGAGGTCCCTTGTCACCCTGAGGAGCTTCAGAAGGTTCTAAGAGGAGGCAAGATTAGAA GAGCAAGTACAGAATGGTGA
AA sequence Show only first row Show all	>Lus10030263 pacid=23153037 polypeptide=Lus10030263 locus=Lus10030263.g ID=Lus10030263.BGIv1.0 annot-version=v1.0 MSSNDESIRGLMLLKLFTRKLQRTLMMMTSRGGGGGGGGGGHNLQKRSGEFEEDEQGMKVVPGDVKRGQFAVTATKGGKPKRFIVELDDLNDPDFLNLLE QAEDKFGFRQEGVLEVPCHPEELQKVLRGGKIRRASTEW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	1.7	0.9693
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	2.0	0.9830
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	2.4	0.9649
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	2.6	0.9640
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	2.8	0.9778
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	3.2	0.9571
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	4.0	0.9661
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	4.4	0.9423
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	4.5	0.9661
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	4.7	0.9383

Compare expression of checked genes

Lus10030263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.