Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46420 306 / 2e-101 Plant protein 1589 of unknown function (.1.2) AT3G61700 277 / 2e-90 Plant protein 1589 of unknown function (.1.2) AT3G10250 144 / 1e-39 Plant protein 1589 of unknown function (.1.2) AT5G04090 135 / 3e-36 Plant protein 1589 of unknown function (.1.2) AT2G29605 70 / 8e-13 Plant protein 1589 of unknown function (.1) AT3G55240 63 / 2e-12 Plant protein 1589 of unknown function (.1) AT1G10657 58 / 2e-10 Plant protein 1589 of unknown function (.1.2.3.4) AT3G28990 57 / 3e-10 Plant protein 1589 of unknown function (.1) AT1G49700 58 / 2e-09 Plant protein 1589 of unknown function (.1.2) AT5G02580 55 / 2e-09 Plant protein 1589 of unknown function (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004015 [exp] 282 / 4e-95 AT2G46420 229 / 1e-75 Plant protein 1589 of unknown function (.1.2) Lus10004016 [exp] 274 / 2e-90 AT3G61700 253 / 3e-83 Plant protein 1589 of unknown function (.1.2) Lus10019011 [exp] 177 / 7e-52 AT3G61700 212 / 4e-66 Plant protein 1589 of unknown function (.1.2) Lus10039340 [exp] 148 / 3e-41 AT3G61700 182 / 6e-55 Plant protein 1589 of unknown function (.1.2) Lus10031001 [exp] 135 / 4e-36 AT3G10250 392 / 3e-137 Plant protein 1589 of unknown function (.1.2) Lus10035397 [exp] 135 / 3e-34 AT3G23270 526 / 2e-171 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10025300 [exp] 54 / 4e-09 AT5G02580 115 / 5e-35 Plant protein 1589 of unknown function (.1.2) Lus10024432 [exp] 54 / 7e-09 AT5G02580 112 / 1e-33 Plant protein 1589 of unknown function (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169900 [exp] 324 / 1e-108 AT2G46420 500 / 1e-178 Plant protein 1589 of unknown function (.1.2) Potri.014G097800 [exp] 301 / 1e-99 AT2G46420 503 / 5e-180 Plant protein 1589 of unknown function (.1.2) Potri.015G019500 [exp] 157 / 1e-44 AT3G61700 161 / 1e-46 Plant protein 1589 of unknown function (.1.2) Potri.012G001700 [exp] 145 / 4e-40 AT2G46420 165 / 3e-48 Plant protein 1589 of unknown function (.1.2) Potri.006G041200 [exp] 141 / 2e-38 AT3G10250 396 / 4e-139 Plant protein 1589 of unknown function (.1.2) Potri.016G038100 [exp] 136 / 1e-36 AT3G10250 381 / 5e-133 Plant protein 1589 of unknown function (.1.2) Potri.015G014550 [exp] 91 / 2e-19 AT3G10250 92 / 2e-20 Plant protein 1589 of unknown function (.1.2) Potri.012G001900 [exp] 89 / 3e-19 AT3G61700 82 / 2e-17 Plant protein 1589 of unknown function (.1.2) Potri.008G189100 [exp] 66 / 3e-13 AT1G10657 122 / 8e-38 Plant protein 1589 of unknown function (.1.2.3.4) Potri.010G042300 [exp] 64 / 2e-12 AT1G10657 119 / 1e-36 Plant protein 1589 of unknown function (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09713 [flax] [poplar] A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence Show only first row Show all	>Lus10030264 pacid=23153110 polypeptide=Lus10030264 locus=Lus10030264.g ID=Lus10030264.BGIv1.0 annot-version=v1.0 ATGAAGAATTTAAAGAACAAACAGGAAGTTCAGTCAAACCAAGGATCACAAGATTCTCAGAGTGACCAGCAGAACAATAACACTCCAGAAGCCCCAGCTG CAGAATCCGGTTCGGTATCTGCTTCCAGCAATGATAACAGAAAGGTCTCGCGCCAAGACATTGAACTTGTTCAAAACTTAATCGAACGGTGTCTACAACT GTACATGAACAAGGACGAGGTGGTCAAAACCCTCTTGACTCGTGCAAGGATCGACCCCGGCTTCACAACATTGGTATGGCAGAAGTTGGAAGAGGAGAAC GCCGATTTCTTCAGGGCTTACTACATCCGTTTGAAGTTGAAGAAACAGATCCTTCTGTTCAATCATCTGCTAGAGAATCAATACCATCTAATGAAGTATC CGGTGCCTCCGAAGGTCCCTTTGGCTCCTATGCAAAATGGGATGCATGCCATGCATGGGGTCGTTTCGTACATAGAGGAAAGGAAAGGGAAATTTTTAGG TGTTGGTAGAAAACTCTGTATTCTGATATATTCCTGTTTGTTTAAGGAGCGGCTGATAAGTAAATCAACTCATGTCGCCAGAATAGCCGACGCATGTTTA ATGAGGGGGGGAATGTACCGTGCAGTTAACAACTTACCCATGGGGTATCCTGTTCTTCAACCACCACCAATGCATCATGCTCCAGGCCACCAACCCCATC TTGACCCCATGGCCCACGGAATCTCGAGCTGCCATGTCGTCAATGGAGTCCCAGCACCAGCAAACTTCCATCCCATGCGCATGAACTCTGGGAATGACAT GGTCATGGAAACGAGCGTTGCTGATGTAGCAGCACCGATGATACCACGGAACGGTACCATGTCAGAAATGGCTGTAAGTCCCACATCAGTGGCGTCCAGC GGTCATTTCCCTTTCACAGCATCAGAGATATCCGGAATGGGAGTGGACACGTCAGCATTGGACACAGCGTTTACATCTGACGTGGCTAGCTCAGTAGGAT TGCAGCTCGGACCGGACGGTGGGGCTGGAGGGTCTAGATCACTGGATCAGATTCAGTGGAACTTCAGCCTCTCGGACCTAACAGCAGATTTATCCAACTT GGGAGATTTAGGTGCTCTAGGAAACTATCCTGGCTCGCCCTTCCTGCCTTCCGATTCTGAAATTTTGCTCGATTCTCCGGATCATGATGGCATCGTCGAG GAATTCTTCGTCGATTCTGTCCCGGGGCAACCCCAGTCCGACGAGGAGAAGTCGTGA
AA sequence Show only first row Show all	>Lus10030264 pacid=23153110 polypeptide=Lus10030264 locus=Lus10030264.g ID=Lus10030264.BGIv1.0 annot-version=v1.0 MKNLKNKQEVQSNQGSQDSQSDQQNNNTPEAPAAESGSVSASSNDNRKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLTRARIDPGFTTLVWQKLEEEN ADFFRAYYIRLKLKKQILLFNHLLENQYHLMKYPVPPKVPLAPMQNGMHAMHGVVSYIEERKGKFLGVGRKLCILIYSCLFKERLISKSTHVARIADACL MRGGMYRAVNNLPMGYPVLQPPPMHHAPGHQPHLDPMAHGISSCHVVNGVPAPANFHPMRMNSGNDMVMETSVADVAAPMIPRNGTMSEMAVSPTSVASS GHFPFTASEISGMGVDTSALDTAFTSDVASSVGLQLGPDGGAGGSRSLDQIQWNFSLSDLTADLSNLGDLGALGNYPGSPFLPSDSEILLDSPDHDGIVE EFFVDSVPGQPQSDEEKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	0	1
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	1.0	0.9506
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	1.4	0.9230
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	3.0	0.9078
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	3.9	0.8860
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	4.5	0.8889
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	5.2	0.8778
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	5.3	0.8672
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	5.9	0.8824
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	6.3	0.8739
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	7.7	0.8857

Compare expression of checked genes

Lus10030264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.