Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61690 637 / 0 nucleotidyltransferases (.1) AT3G51620 434 / 2e-143 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 372 / 4e-122 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 325 / 2e-105 Nucleotidyltransferase family protein (.1.2.3.4) AT5G53770 49 / 6e-06 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030265 [exp] 926 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 922 / 0 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 686 / 0 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10022746 [exp] 436 / 2e-145 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 438 / 3e-145 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 434 / 1e-143 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 351 / 5e-113 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 344 / 4e-111 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 339 / 4e-109 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169732 [exp] 740 / 0 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 726 / 0 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.015G020400 [exp] 656 / 0 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 642 / 0 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.013G154900 [exp] 419 / 1e-137 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 416 / 1e-136 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 380 / 3e-124 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 85 / 2e-19 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10030266 pacid=23153191 polypeptide=Lus10030266 locus=Lus10030266.g ID=Lus10030266.BGIv1.0 annot-version=v1.0 ATGGGCGAGTATGGAACTGCGGAGTCACAGCCATCAAGTGTACTCTTGCCCAACGGGTTACTGCCTGATGAAGCAGACTCCGTGATGCAAGTGCTTGACT CGGCCAGATGGTCGAAAGCTGAAGAGAGAACTGCTGAACTCATAGAATGCATTAAGCCAAACAAACCCTCTGAGAACCAACGTAAGGCCGTGGCATCTTA TGTGCAGCAGCTTATTGCCAAGTGCTTTCCTTGCCAGGTCTTCACTTTCGGGTCTGTTCCGCTTAAGACTTATTTGCCGGATGGGGATATTGACTTGACA GCCTTCAGTAAGAATCAGACTTTGAAAGAGACTTGGGCTCATCAGGTTAGGGATATGTTGGAGAACGAGGAGAAGAACGAGAATGCTGAATTTCGTGTAA AGGAAGTGCAGTACATTCAGGCTGAGGTGAAACTTGTGAAGTGCCTTGTGGAGAACATTGTCGTGGATATATCGTTTAACCAGCTTGGTGGGCTATGCAC ACTCTGTTTCCTTGAAGAGGTTGATCATAAAATAGGCAATGATCATTTATTCAAGCGGAGCATTATTCTCATAAAGGCATGGTGTTATTATGAGAGCCGT ATATTGGGTGCTCACCATGGTCTGATATCCACTTATGCGCTGGAAACTCTGGTTCTCTATATCTTTCAAGTTTTCAACAGTTCCTTCGCTGGACCACTTG AGGTTCTCTATCGTTTTCTTGAGTTCTTTAGTAAATTTGATTGGGACAACTTCTGTGTTAGCCTCTGGGGCCCTGTACCCATCAGTTCACTTCCAAACGT GACAGCTGAAGCGCCTCGGAGGGATGATGGAGATTTACGACTCGAAAAATCATTTCTTGATTCCTGTTGTTCGGCATATGCAGTTTTTCCCAATGATCAA GAAAACAATAGCTCCCCGTTCATCTCCAAGCACTTCAATGTCATTGATCCTTTGCGTGTTAACAACAACCTAGGTCGCAGTGTTAGCAAAGGTAACTTCT TCAGGATTCGTAGTGCATTTGCATTTGGGGCAAAGAAGCTTGCTAGGTTACTTGAATGTGACAGCGAGAACTTACACACTGAAGTGAATCGGTTTTTCCA GAATACCTGGGAAAGACATGGAAGTGGTCACCGTCCTGATGCTCCAATCGATGTGTTTGGGCCGCTGAGACCATCTGATCATGATTACTTGATAGGGTCG AGGAATGAGAATCAAATAAATACTTCAAGTCGTGGAAGTCAAAATGATATGTCACATGGGTTACACAGAGATATATCCCAGCATGGTAGTCATCCCTTAG AAAGCACGTCACAGAGTAGTGATATTGCTACCTCATTTCAAACACAAATTCAAACGATCAATAACTCCAGTTTGAGGACATCTGACGAGTCTAGACGAGA AATCAATTCACATCATGGTGTTCATGCCGATAATGGTCCTCCGAGTTCTAAACCAGACAGCTTGTTACACGATATACAAGGAAGGTTTATATTTGCTAGG ACACGCTCAAGTCCCGAGCTTACTGATACCTATAATGAAGCTTCCGCACAAACTAGACAGAATAAAGCACCAGTAGCAAAGGGCCCGGCCGCGGCAGTGA TGTTTGGCAGCATCAAGAGACACACCTTCCCCTGA
AA sequence Show only first row Show all	>Lus10030266 pacid=23153191 polypeptide=Lus10030266 locus=Lus10030266.g ID=Lus10030266.BGIv1.0 annot-version=v1.0 MGEYGTAESQPSSVLLPNGLLPDEADSVMQVLDSARWSKAEERTAELIECIKPNKPSENQRKAVASYVQQLIAKCFPCQVFTFGSVPLKTYLPDGDIDLT AFSKNQTLKETWAHQVRDMLENEEKNENAEFRVKEVQYIQAEVKLVKCLVENIVVDISFNQLGGLCTLCFLEEVDHKIGNDHLFKRSIILIKAWCYYESR ILGAHHGLISTYALETLVLYIFQVFNSSFAGPLEVLYRFLEFFSKFDWDNFCVSLWGPVPISSLPNVTAEAPRRDDGDLRLEKSFLDSCCSAYAVFPNDQ ENNSSPFISKHFNVIDPLRVNNNLGRSVSKGNFFRIRSAFAFGAKKLARLLECDSENLHTEVNRFFQNTWERHGSGHRPDAPIDVFGPLRPSDHDYLIGS RNENQINTSSRGSQNDMSHGLHRDISQHGSHPLESTSQSSDIATSFQTQIQTINNSSLRTSDESRREINSHHGVHADNGPPSSKPDSLLHDIQGRFIFAR TRSSPELTDTYNEASAQTRQNKAPVAKGPAAAVMFGSIKRHTFP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	0	1
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	1.4	0.9759
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	2.4	0.9741
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	2.8	0.9653
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	3.0	0.9665
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	6.6	0.9530
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	7.7	0.9476
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	9.5	0.9579
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	9.5	0.9608
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	11.0	0.9611
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	11.2	0.9450

Compare expression of checked genes

Lus10030266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.