Plant FIBer expression Database

Lus10030267 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61690 381 / 8e-118 nucleotidyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004018
[exp]
866 / 0 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1)
Lus10030265
[exp]
865 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1)
Lus10004019
[exp]
555 / 0 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G097600
[exp]
517 / 9e-169 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1)
Potri.002G169732
[exp]
511 / 2e-166 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1)
Potri.015G020400
[exp]
313 / 9e-93 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1)
Potri.012G000900
[exp]
311 / 2e-92 AT3G61690 907 / 0.0 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence
>Lus10030267 pacid=23153041 polypeptide=Lus10030267 locus=Lus10030267.g ID=Lus10030267.BGIv1.0 annot-version=v1.0
ATGCCCTTTCCCATACCACCTGCAGCTCTAGCTTCTATGGGATACCTTCAACGGAATTTGGGTGGAATGGTGCCAACAAACACCCCATTGTTGGAGACTC
ATTGGGGTCCAAGCATGCAGTTTCCTCAGAGATTGTTTCCTTCTCACTTGAACCACTATTTTCCCGCAGTAGGGTTGACAAGAAGTCCAGAAGGTTCCGT
TGAACTTTCAAACAAGAATTTTGGTTCTTTGGAATCGAATCTTGGGGAGGCTGACAACGGTTTGTTGTGTGAACATGAAAGGTCCTCGATCGATAGTCTT
CAACCTGATAATGGGAGTTCCCAGATTAATCAATCTGATGATAGACAGCAATCTATCTCAGGTAGTAATTATCACATTGTTCAATTATCTGGAGCAGGTG
GCTCTGGGTACTCTTCTAGAGTTCAACCAAAGTCCTCCAGGGAGACTCGACAATCAAGTAGGCGAGATCATGTGGAAACTTATCCTTACTCAGAAATCAT
AGGTGCTGAGGAAAAGCTTTCTAGCTCAAGAAATTCTTCCGCTGGGGCCAGTGATTCTGTGAGAAGTAGGCCTGTATCTGAGTCTTCATGGGATGGATTA
TCTGCAAAGACAGTGAGGGAAAAGCGAGGGAGGAAGACTTCGGCAGCTATAGCATCTATTGTCTATGGGCAAGGTGAGGGAATCAATGAGAATGGCTCCA
TTCAGATGGATGATGACACACAACTCTCATCAAGCCCCAAGACTATTGAACGGGGCTTCGGGCCGCCAGCTCCTAGTTCTTTCCATATTTCAAGGCATAA
TAATGTGCCTCGATTTGAAATAGTACCAACAAGTGCGTCTGATTCATTAGCACCTATTCCTCCGGTGCAATTAGGTCACGGTGCACGGTTTTATCCTACG
GGGCCACCCGTTCCATTTGTTACTATGCTTCCTATTTATAACTTCCCAACAAAGGGGGCAATTTCTGAAGCATCAACTAGCCAGCTGAGCTTTGAGGAGA
TCATAGATAACAACGATCCCTGTCAGAATGGTAATTCAACGAGAGTTTCAGTCGTTGATGAGCCATTTGAACTCAAGTCTGACATCCTCAATAGTGATTT
TGATAGTCATTGGCAAAACTTGCAATTTGGAAGGTTTTGCCAGGATCCTCCACTGCCCTCCCCCTTGACCTGTCCCTCTTCACCTGTGGTAGTACCACCT
GTATATTTACAAGGCCGTTTCCCATGGGAAGGTCCTGGAAGACCTATCTCACCTAATATGAATCTTTTCCCTCAGCTGATGAGTTATGGGCCTCGTATCC
TTCCAGTTCCTCCCGTGCAAGCTGCATCAAATCGACCTGCTATACAGCCTTTCGTTGATGAGGTGCCAAGATATCGTGGTGGAACTGGAACCTACCTGCC
AAACCTTCATAAAGTGGGAGTCCGAGATAGGCATTCCCCAAACTCCAGAAAAACAAACTACAACTTCGATAGAAGTGACTACCATGGCGATCGGGAAGGG
AACTGGAATAATTCCAAGTCGAGAACCCCTGGGCGCGGTCAGAGTCGTAACCAAACCGATAAGTCGAGTGCAAGACTTGAAAGTAGATCTGACCGGCCAT
GGGTTTCGCACAGACACGACACTTCCTTTACTTATCAGTCTCAAAACGGGCTACCAGCCCGGCCAAATGCCTCTCTAGTAGGGTCTGCAGCAAATATGAC
TTATGGCATGTATCCAATAACGTCTATGAATTTGAATGGACAGGTTGTCATGATGTATCCTTACGACCAAAATGCTGCTGGTTATGTTTCTCCTGCGGAC
CAGATCGAGTTTGGCTCCCTTGGCCCTGTGGGATACTCCGGTGGTGTAAACGATCTCAACGAGGGGAGTCGTCCCGGTGGGGGATTTGAGGACCAAAGAT
ATCAACTGTCTTCGCCGGATCAGCCTTCTTCACCCCACTTTCAGAGGTAG
AA sequence
>Lus10030267 pacid=23153041 polypeptide=Lus10030267 locus=Lus10030267.g ID=Lus10030267.BGIv1.0 annot-version=v1.0
MPFPIPPAALASMGYLQRNLGGMVPTNTPLLETHWGPSMQFPQRLFPSHLNHYFPAVGLTRSPEGSVELSNKNFGSLESNLGEADNGLLCEHERSSIDSL
QPDNGSSQINQSDDRQQSISGSNYHIVQLSGAGGSGYSSRVQPKSSRETRQSSRRDHVETYPYSEIIGAEEKLSSSRNSSAGASDSVRSRPVSESSWDGL
SAKTVREKRGRKTSAAIASIVYGQGEGINENGSIQMDDDTQLSSSPKTIERGFGPPAPSSFHISRHNNVPRFEIVPTSASDSLAPIPPVQLGHGARFYPT
GPPVPFVTMLPIYNFPTKGAISEASTSQLSFEEIIDNNDPCQNGNSTRVSVVDEPFELKSDILNSDFDSHWQNLQFGRFCQDPPLPSPLTCPSSPVVVPP
VYLQGRFPWEGPGRPISPNMNLFPQLMSYGPRILPVPPVQAASNRPAIQPFVDEVPRYRGGTGTYLPNLHKVGVRDRHSPNSRKTNYNFDRSDYHGDREG
NWNNSKSRTPGRGQSRNQTDKSSARLESRSDRPWVSHRHDTSFTYQSQNGLPARPNASLVGSAANMTYGMYPITSMNLNGQVVMMYPYDQNAAGYVSPAD
QIEFGSLGPVGYSGGVNDLNEGSRPGGGFEDQRYQLSSPDQPSSPHFQR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61690 nucleotidyltransferases (.1) Lus10030267
[exp]
0 1
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Lus10001147
[exp]
6.3 0.8737
AT3G18100 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3... Lus10009636
[exp]
10.8 0.8366
AT2G23740 C2H2ZnF AtCZS nucleic acid binding;sequence-... Lus10022483
[exp]
11.0 0.8397
AT5G42950 GYF domain-containing protein ... Lus10012078
[exp]
11.1 0.8682
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Lus10011182
[exp]
12.1 0.8709
AT4G21710 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-dir... Lus10015446
[exp]
12.3 0.8666
AT3G05680 EMB2016 embryo defective 2016 (.1.2) Lus10021265
[exp]
19.9 0.8618
AT2G36480 ENTH/VHS family protein (.1.2.... Lus10014370
[exp]
21.8 0.8473
AT4G10070 KH domain-containing protein (... Lus10002947
[exp]
22.3 0.8517
AT3G46920 Protein kinase superfamily pro... Lus10019577
[exp]
23.0 0.8315

Lus10030267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.