Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 269 / 4e-88 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 240 / 6e-77 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 220 / 2e-68 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 213 / 2e-65 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 208 / 1e-64 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 197 / 2e-59 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 192 / 4e-58 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT2G45850 170 / 1e-49 AT-hook AT hook motif DNA-binding family protein (.1.2) AT1G63470 166 / 9e-48 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 165 / 6e-47 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004022 [exp] 534 / 0 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 258 / 6e-84 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10038903 [exp] 240 / 7e-77 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 235 / 9e-75 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10031696 [exp] 214 / 1e-66 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 206 / 7e-65 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 182 / 3e-54 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10011067 [exp] 182 / 5e-54 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10040085 [exp] 178 / 2e-52 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070000 [exp] 383 / 4e-133 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 374 / 2e-129 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 250 / 1e-80 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.003G116500 [exp] 249 / 1e-80 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 247 / 7e-80 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G005000 [exp] 205 / 9e-63 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 198 / 3e-60 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 198 / 3e-60 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 187 / 1e-56 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 177 / 1e-52 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain CL0615 [flax] [poplar] PF02178 [flax] [poplar] AT_hook AT hook motif
Representative CDS sequence Show only first row Show all	>Lus10030269 pacid=23152962 polypeptide=Lus10030269 locus=Lus10030269.g ID=Lus10030269.BGIv1.0 annot-version=v1.0 ATGGAAACAAGGGAAGGGATGGATTCAGGGGTGACGGTGATCGGAGCAGAAGCTCCGTCAACTTACCATGTAGCTCCGAGGGCAGAAAACCCTAACCAGA TCGGCGGCGGAGGGGTTTCTCAACATCATCAGCAGCAGCAGATGATGGTGCTGTCGTCTCCGGTCACCGGAGAGAAGAAGAAGAGAGGGAGGCCGAGGAA GTATGCACCGGATGGCGCCGCCGCCGGAGCTTTGTCCCCAATGCCGATCTCTGCTTCTACTCCACCTGCCTCCGGCGGCGGTGGAGGAGGCGGAGGAGAG TACTCCAACTCTCACTCTGTTGGAGGAGGAAAATCCAGTAAAGTTGTGTCTTCTGCTGCTGGCTATGAGAAGAAGAAGCACAAGAAAATTGGGATGGAGA ATCTTGATGATTGGGGTCCTCAGTCTGTTGGCACAAACTTCACTCCCCATGTCATTGCTGTCAATGCCGGCGAGGATGTCACGATGAAGGTTATATCGTT CTCGCAACAAGGACCTCGAGCCATTTGCATCCTTTCAGCTAACGGAGTGATATCGAACGTTACTCTCCGTCAGTCTGATTCTTCTGGTGGTACCCTGACG TATGAGGGCCGATTCGAGATACTTTCCTTATCCGGATCATTCATGCCGACCGAGAGTCAGGGGACAAGAAACCGGACAGGCGGGATGAGTGTGTCGTTGG CTAGCCCTGATGGCCGTGTTGTAGGAGGCAGTGTCGCTGGGCTTTTGATCGCTGCCACTCCTGTACAGGTTGTGGTGGGTAGTTTCTTACCAGGCAACAA CCAGCCAGACCCTAAACCAAAGAAAGTGAAGGTGGACCCTGCAGCACCGGTGGATGTAACGGCGCAAGCTCCTCCGATGACAATAGCACCAACGAATAGC ATCCACGGATCGTCTCATCACATGGAACGAGACGAGAATCATATGGGCGGTACTGGACAACATATGCAGCAGCAGAACTCGTATCGGAGAGATACGTGGG CTGCGTTCCACTCGATGGCCGCAGATCATAGGAATTCAGGAACTGACATCAACATCTCTTTGCCGGAAGGCTGA
AA sequence Show only first row Show all	>Lus10030269 pacid=23152962 polypeptide=Lus10030269 locus=Lus10030269.g ID=Lus10030269.BGIv1.0 annot-version=v1.0 METREGMDSGVTVIGAEAPSTYHVAPRAENPNQIGGGGVSQHHQQQQMMVLSSPVTGEKKKRGRPRKYAPDGAAAGALSPMPISASTPPASGGGGGGGGE YSNSHSVGGGKSSKVVSSAAGYEKKKHKKIGMENLDDWGPQSVGTNFTPHVIAVNAGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQSDSSGGTLT YEGRFEILSLSGSFMPTESQGTRNRTGGMSVSLASPDGRVVGGSVAGLLIAATPVQVVVGSFLPGNNQPDPKPKKVKVDPAAPVDVTAQAPPMTIAPTNS IHGSSHHMERDENHMGGTGQHMQQQNSYRRDTWAAFHSMAADHRNSGTDINISLPEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	0	1
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	1.7	0.9251
AT5G03670			unknown protein		Lus10035565 [exp]	3.9	0.9180
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	4.5	0.9119
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	5.7	0.9231
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	6.3	0.9157
AT2G34040			Apoptosis inhibitory protein 5...		Lus10013953 [exp]	7.5	0.8817
AT3G02710			ARM repeat superfamily protein...		Lus10031364 [exp]	8.9	0.8806
AT1G19990			unknown protein		Lus10033141 [exp]	9.8	0.9090
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	10.6	0.9076
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	11.7	0.9053

Compare expression of checked genes

Lus10030269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.