Plant FIBer expression Database

Lus10030273 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60810 259 / 1e-88 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004025
[exp]
0 / 1 AT3G60810 161 / 2e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G148400
[exp]
268 / 1e-91 AT3G60810 276 / 6e-95 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07386 DUF1499 Protein of unknown function (DUF1499)
Representative CDS sequence
>Lus10030273 pacid=23153197 polypeptide=Lus10030273 locus=Lus10030273.g ID=Lus10030273.BGIv1.0 annot-version=v1.0
ATGGCTTCCTCTGTATGTACCTCTTACTGCAAACCACAATTCAACACCAGATCGCAACGTCCTACCATACTTTGCCAGCACCAGCACCAGAACAACCACC
GCAGCAACGCACAAATCTCTCGACGGGAGATTATACTGAGGAGCAGCGAATTGGCTGCACTCGCTAATATAAAAACAAAATGCAGTGGGAAGAAGCCAGA
TTACCTAGGAGTTCAGAAGAACCAGAATCAACTTGCGCTCTGCCCTGCTACTAACAACTGCATCTCCACCTCTGAGGATGTCGCTGATTCTTCACACTAT
GCTCCTCCTTGGAACTACAATGGCGGAAGGAGGAAGAATCCCGTCAGCGCCCCAATTGCTATGGAGGAGCTTGTTCAAGTGATAGAATCAACAAAGCCAG
ACAAGTACACTGCCAAGATCGTTGAACGGAAGAGCAATTACTTGCACGTTGAGTACCAAAGTCCCATCTTAGGGTTGGTGGACGATGTGGAGTTCTTGTT
CCCTGGAGGTGGGAAGTCGATCGTCGAGTATCGATCAGCTTCGAGGCTTGGAAACGTCGATTTCGATGTTAACAGAAAACGAATCAAGACTCTACGCCAG
GAGCTGGAGAAGAAAGGATGGTCCTCTGAAACTTCTTTCTAG
AA sequence
>Lus10030273 pacid=23153197 polypeptide=Lus10030273 locus=Lus10030273.g ID=Lus10030273.BGIv1.0 annot-version=v1.0
MASSVCTSYCKPQFNTRSQRPTILCQHQHQNNHRSNAQISRREIILRSSELAALANIKTKCSGKKPDYLGVQKNQNQLALCPATNNCISTSEDVADSSHY
APPWNYNGGRRKNPVSAPIAMEELVQVIESTKPDKYTAKIVERKSNYLHVEYQSPILGLVDDVEFLFPGGGKSIVEYRSASRLGNVDFDVNRKRIKTLRQ
ELEKKGWSSETSF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G60810 unknown protein Lus10030273
[exp]
0 1
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Lus10029347
[exp]
3.9 0.8967
AT5G14660 DEF2, PDF1B, AT... peptide deformylase 1B (.1.2) Lus10022255
[exp]
6.9 0.9207
AT1G10660 unknown protein Lus10029133
[exp]
10.4 0.8924
AT2G38420 Pentatricopeptide repeat (PPR)... Lus10002476
[exp]
13.6 0.8562
AT4G23900 Nucleoside diphosphate kinase ... Lus10001824
[exp]
14.3 0.8260
AT5G45680 ATFKBP13 FK506 BINDING PROTEIN 13, FK50... Lus10006949
[exp]
15.0 0.9201
AT1G12250 Pentapeptide repeat-containing... Lus10032239
[exp]
15.1 0.9171
AT3G09210 PTAC13 plastid transcriptionally acti... Lus10035543
[exp]
16.2 0.9162
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Lus10002315
[exp]
18.8 0.9105
AT2G21385 unknown protein Lus10028792
[exp]
20.4 0.9062

Lus10030273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.