Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02390 226 / 3e-75 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02380 224 / 3e-74 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G29480 60 / 8e-11 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT2G29460 58 / 4e-10 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29490 56 / 2e-09 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1) AT2G29450 56 / 3e-09 ATGSTU1, AT103-1A, ATGSTU5 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, glutathione S-transferase tau 5 (.1) AT2G29470 51 / 1e-07 GST21, ATGSTU3 GLUTATHIONE S-TRANSFERASE 21, glutathione S-transferase tau 3 (.1) AT2G29440 50 / 2e-07 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT5G41210 50 / 3e-07 GSTU12, GST10, ATGSTT1 glutathione S-transferase THETA 1 (.1) AT2G29420 48 / 1e-06 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005367 [exp] 234 / 3e-78 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 234 / 4e-78 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10004026 [exp] 220 / 9e-74 AT2G02390 143 / 6e-44 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005368 [exp] 65 / 5e-14 AT2G02390 72 / 8e-18 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10004151 [exp] 50 / 3e-07 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10021103 [exp] 50 / 3e-07 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10001491 [exp] 50 / 3e-07 AT3G09270 185 / 5e-59 glutathione S-transferase TAU 8 (.1) Lus10021102 [exp] 50 / 4e-07 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1) Lus10041654 [exp] 47 / 3e-06 AT2G29420 175 / 1e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069600 [exp] 278 / 2e-95 AT2G02390 204 / 1e-66 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.004G232600 [exp] 250 / 2e-84 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.010G061301 [exp] 62 / 1e-11 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G174900 [exp] 59 / 1e-10 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 59 / 1e-10 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.008G175000 [exp] 56 / 3e-09 AT2G29420 177 / 7e-56 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 56 / 3e-09 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.016G118500 [exp] 55 / 4e-09 AT2G29420 194 / 3e-62 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.016G104500 [exp] 53 / 1e-08 AT3G09270 196 / 2e-64 glutathione S-transferase TAU 8 (.1) Potri.010G061600 [exp] 53 / 2e-08 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030274 pacid=23153109 polypeptide=Lus10030274 locus=Lus10030274.g ID=Lus10030274.BGIv1.0 annot-version=v1.0 ATGGACAAAACCAATCTTCCGCCGCCGGAGAAAGAACTCCTTCTGTACTCTTACTGGCAAAGCTCTTGTTCATGGCGAGTCCGCTTCGCTATGAAACTCA AAGGGATTCCGTACCAGTACATAGCAGTGGATCTGGCGAAAGGGGAACAGTTCCGCCCAGAGTTTGAAAACTTGAATCCACTTGGGTATGTTCCGGTGCT GGTAGATGGCGGCGTGGTTGTATCGGATTCCTTGGCTATCTTGATGTATTTGGAGGGGAAGTATCCGGAGAATCCGTTGTTGCCGGAGGATCCTCAGCTT AGAGCTCTCAATCTCCAGGCAGCAGGTGTTGTCACTTCAAGCATACAGCCTCTTCATATGCAGTCTCTACTGAATTACATAGGAGAGAAATTCGGACCCG AAGAGCGATCCTTGTGGGCCAAGACTCATATAGAAAAAGGCTTTCTTGCTCTTGAGAAGTTACTGAAAGATTCCGCGGGTCGATATGCAACTGGAGATTC TCTGTACATGGCTGATGTGTTCTTGGCACCACAGATTGCTGTCGCTGTAAACCGGTTCCACATCGACATGACAGGGTATCCGACATTGAGCCGAATACAT GAATCGTACAAGGCACTGCCTGAGTTTTTGGCTTCAGCTCCAGAAGCGCAACCAGATGCTGTGCTTTGA
AA sequence Show only first row Show all	>Lus10030274 pacid=23153109 polypeptide=Lus10030274 locus=Lus10030274.g ID=Lus10030274.BGIv1.0 annot-version=v1.0 MDKTNLPPPEKELLLYSYWQSSCSWRVRFAMKLKGIPYQYIAVDLAKGEQFRPEFENLNPLGYVPVLVDGGVVVSDSLAILMYLEGKYPENPLLPEDPQL RALNLQAAGVVTSSIQPLHMQSLLNYIGEKFGPEERSLWAKTHIEKGFLALEKLLKDSAGRYATGDSLYMADVFLAPQIAVAVNRFHIDMTGYPTLSRIH ESYKALPEFLASAPEAQPDAVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	0	1
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	1.4	0.9403
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	1.4	0.9358
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	1.7	0.9347
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	2.2	0.9312
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	6.0	0.9321
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	7.7	0.9007
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	9.2	0.9224
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	9.2	0.8999
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	10.1	0.9310
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	10.2	0.8921

Compare expression of checked genes

Lus10030274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.