Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00090 561 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G42660 61 / 1e-09 transducin family protein / WD-40 repeat family protein (.1) AT5G08390 56 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 56 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 53 / 3e-07 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 53 / 3e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G15440 52 / 7e-07 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT3G49660 50 / 1e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 50 / 3e-06 transducin family protein / WD-40 repeat family protein (.1) AT4G04940 50 / 3e-06 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004027 [exp] 758 / 0 AT4G00090 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034648 [exp] 67 / 1e-11 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021720 [exp] 65 / 8e-11 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10004167 [exp] 61 / 1e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10043473 [exp] 55 / 9e-08 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10041007 [exp] 54 / 1e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034114 [exp] 54 / 2e-07 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10021059 [exp] 54 / 2e-07 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10013452 [exp] 54 / 3e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148100 [exp] 616 / 0 AT4G00090 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G069400 [exp] 611 / 0 AT4G00090 592 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G065200 [exp] 63 / 2e-10 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.003G060500 [exp] 59 / 5e-09 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 57 / 2e-08 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.008G002300 [exp] 55 / 9e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 53 / 3e-07 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 52 / 3e-07 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 52 / 8e-07 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G241800 [exp] 50 / 3e-06 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10030275 pacid=23152964 polypeptide=Lus10030275 locus=Lus10030275.g ID=Lus10030275.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTACTCCCGATCGTCCTTCTCTCGCTGCTCCTCGGAGCTCTCATCGCTTTCTTCTTCTTCAGAACCTACTTCCTCAACCGCAAATCCGAAA TCCGATCCATTTCCAAGCCGGAGGACCTCCTTCCCGATCCCCCGAACAAGAAGCCCGCCAAGGCTTCTAAGAAACCCCACTCTAAACCCCACTCCAATGC CTCTGATAAGGAGCAAAATAAGCGGCATCATCCGCTGGATTTGAATACGCTGAAAGGCCATGGTGATTCGGTCACTGGTGTGTGTTTCTCCCCTGATGGT CTCCATTTGGCCACTGCTTGCACTGATGGGCTGGTCCGGGTATTCAAGTTGGATGATGCTACGAGTAAGAGTTTCAAGTTTCTCCGGATCAATTTACCTG CTGGTGGTCAGCCTGCTGCAGTGGTTTTCACAGATGACGAGTCCTCTGTGGTTGTCGCATCAGATGCTATGATCGGTTCTTCCCTATACATGTATGGAGA AGAGAAGGCCAAAGCTTCAAATGACACAAAGCACCAACCCAAGCTTCCTCTTCCAGAGATCAAATGGCAACACCACAAAATTCATGCTGGAAAAGCTGTT ATCACCATGGTTGGGGCTGCTTCGACTTATGGTACTGGTGATGGAAGTACCATTATTGCTTCTTGCTCTGAAGGCACAGATATCAAAATCTGGCATGGAA AGACAGGGAAGCTTGTGGGTGAGGTTGATACGAACCAGTTGAAGAATACCATGGCTACTTTATCGCCAAATGGACGTTTCATTGCTGCCGCAGCTTTTAC TGCTGATGTGAAGGTCTGGGAGATTGTCTATGCTAAGGATGGCTCTGTCAGGGAAGTAGTAAATGTAATGCAACTGAAAGGCCACAAGAGTGCAGTAACG TGGTTGTGTTTTACCCCCAACTCGGAGCAAATAATCACAGCATCAAAAGACGGGTCGATCCGAATTTGGAACATCAACGTCCGATATCATATGGATGAAG ATCCAAAGACTCTAAAAGTATTCCCGATCACATCTCATGACTCCAAGGGCGCTACTTTCCAATACCACCATCTCAGCATCTCTCCCGATGGCAAGACACT GGCGGCCACACATGGTTCTACATTGCAGTGGTTATCCGCAGAAACAGGAGAGGTTTTGGACACAGCTGAAAAGGCTCATGACGGTGATATCACTTGGATT TCCTGGTCGCCAAAGCCTATTCCACAAGGTGGCAAACTGGGTTTGGTGCTGGCAACTTCTGGTGTGGACAAGAAAGTGAAGCTGTGGGCAGCTCCATCAG TGAAGTAG
AA sequence Show only first row Show all	>Lus10030275 pacid=23152964 polypeptide=Lus10030275 locus=Lus10030275.g ID=Lus10030275.BGIv1.0 annot-version=v1.0 MEALLPIVLLSLLLGALIAFFFFRTYFLNRKSEIRSISKPEDLLPDPPNKKPAKASKKPHSKPHSNASDKEQNKRHHPLDLNTLKGHGDSVTGVCFSPDG LHLATACTDGLVRVFKLDDATSKSFKFLRINLPAGGQPAAVVFTDDESSVVVASDAMIGSSLYMYGEEKAKASNDTKHQPKLPLPEIKWQHHKIHAGKAV ITMVGAASTYGTGDGSTIIASCSEGTDIKIWHGKTGKLVGEVDTNQLKNTMATLSPNGRFIAAAAFTADVKVWEIVYAKDGSVREVVNVMQLKGHKSAVT WLCFTPNSEQIITASKDGSIRIWNINVRYHMDEDPKTLKVFPITSHDSKGATFQYHHLSISPDGKTLAATHGSTLQWLSAETGEVLDTAEKAHDGDITWI SWSPKPIPQGGKLGLVLATSGVDKKVKLWAAPSVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00090			Transducin/WD40 repeat-like su...		Lus10030275 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	5.3	0.8495
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10017864 [exp]	5.5	0.8355
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	7.7	0.8584
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	9.6	0.8376
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017540 [exp]	11.3	0.8055
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	21.2	0.8375
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10012598 [exp]	24.1	0.7580
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	25.5	0.8370
AT5G08060			unknown protein		Lus10040513 [exp]	26.2	0.8265
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	26.5	0.8304

Compare expression of checked genes

Lus10030275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.