Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 159 / 3e-47 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 157 / 2e-46 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 134 / 5e-38 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G51410 131 / 4e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 130 / 7e-37 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G19440 129 / 2e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 129 / 4e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 127 / 2e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33600 124 / 2e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G76470 124 / 4e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 329 / 5e-114 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 195 / 2e-61 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 152 / 9e-45 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10008668 [exp] 148 / 2e-43 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 143 / 3e-41 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 138 / 1e-39 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026072 [exp] 140 / 2e-38 AT5G19440 339 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024130 [exp] 139 / 6e-38 AT5G09860 933 / 0.0 nuclear matrix protein-related (.1.2) Lus10039595 [exp] 133 / 1e-37 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147702 [exp] 229 / 6e-75 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 207 / 3e-66 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 202 / 2e-64 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 191 / 5e-60 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 189 / 2e-59 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 188 / 6e-59 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 188 / 7e-59 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 177 / 7e-55 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 176 / 2e-54 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 176 / 4e-54 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10030276 pacid=23152957 polypeptide=Lus10030276 locus=Lus10030276.g ID=Lus10030276.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGGAAGAAGCCGGAGATCAAAATGGAGGAAGGAGTACAGTAGCCTACTGTGTGACCGGAGGCACTGGATTCCTCGGCTCATGGCTGGTCA AGTCCCTTCTTCACCACGGCTACTCCGTCCACACAACCGTCAGACCTCACAACGACGGCATAAGGTTCCTGACGGAGCTCCCCGGAGCCAAACACCGGCT GAAGATCTTCGAGGCGGACCTGAACGATCCGGACAGCTTCTCGGCCGCAATCCGCAGCTGCTTGGGAGTCTTCCACGTGGCGACTCCGATGGACTTCGAC AGAAAGGAGACTGTCGAAGAAATCGTGGGGCGGTCTGTGGAAGGTGCGCTCGGGATAGTGAAAGCATGCATGCAGGTGATGGACGAGAGTTACTGGACCG ATGTGGAGTATGTCAAGGCGCTGGATTCGAACTTCGGATTTTATGTGATTTCGAAGACGTTGACTGAACGGAAGGTGACGGAGTTTGCGGAGGAAAATGG GCTGGAGTTGGTTACCGTTAACCCCACTTTTGTTGTGGGTCCCTTCGTTTGTCCCAAGTTTCCTGGTTCCGTCAAGACTACTTACAATAAACCTAGGCAA TCCATGATTGTCCATCATCGACGGTCCAAATGA
AA sequence Show only first row Show all	>Lus10030276 pacid=23152957 polypeptide=Lus10030276 locus=Lus10030276.g ID=Lus10030276.BGIv1.0 annot-version=v1.0 MASSEEAGDQNGGRSTVAYCVTGGTGFLGSWLVKSLLHHGYSVHTTVRPHNDGIRFLTELPGAKHRLKIFEADLNDPDSFSAAIRSCLGVFHVATPMDFD RKETVEEIVGRSVEGALGIVKACMQVMDESYWTDVEYVKALDSNFGFYVISKTLTERKVTEFAEENGLELVTVNPTFVVGPFVCPKFPGSVKTTYNKPRQ SMIVHHRRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10030276 [exp]	0	1

Compare expression of checked genes

Lus10030276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.