Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62660 560 / 0 Glycosyl hydrolases family 32 protein (.1) AT1G12240 552 / 0 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT3G13790 372 / 2e-122 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT5G11920 352 / 1e-116 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT2G36190 355 / 2e-115 ATCWINV4 cell wall invertase 4 (.1) AT1G55120 352 / 2e-114 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G52600 345 / 1e-111 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13784 337 / 8e-109 ATCWINV5 cell wall invertase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004031 [exp] 863 / 0 AT1G12240 783 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10004340 [exp] 595 / 0 AT1G12240 833 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10028922 [exp] 590 / 0 AT1G12240 832 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10024605 [exp] 584 / 0 AT1G12240 805 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10032242 [exp] 575 / 0 AT1G62660 800 / 0.0 Glycosyl hydrolases family 32 protein (.1) Lus10031144 [exp] 530 / 0 AT1G12240 729 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Lus10014219 [exp] 363 / 8e-119 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 361 / 7e-118 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10037633 [exp] 357 / 1e-116 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112600 [exp] 630 / 0 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 576 / 0 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 521 / 1e-179 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1) Potri.006G227500 [exp] 370 / 2e-121 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G210600 [exp] 369 / 6e-121 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.006G227400 [exp] 363 / 3e-119 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.016G077400 [exp] 360 / 1e-117 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 357 / 2e-116 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0143 [flax] [poplar] PF11837 [flax] [poplar] DUF3357 Domain of unknown function (DUF3357)
Representative CDS sequence Show only first row Show all	>Lus10030278 pacid=23152982 polypeptide=Lus10030278 locus=Lus10030278.g ID=Lus10030278.BGIv1.0 annot-version=v1.0 ATGGCTGACCAACGCACGCCAATCCTTCCTGTGGCGGATCCTGACTACATCCCCATCCCAGATGACTCTACCAGCCCGGGTCGGGTCTCTACGCGAAACC GGTCCAAGAAACTTCTTCTGTTTTCCCTGTCTTGTGGGCTGGCCCTGGTTTGGGTAATACTTGGGAACGGATCCGACCACTCGACCGACATCGGTCATAC ACCATCCACCGCTGCTAAAACGACGTCACGAGGGAAGCATGATGGCGTGTCGGAGAAATCCAACGGTCAACAGTCGTTGTTCAGGGACTACGACTGGGAG AATAAAACGTTGTCGTGGCAGAGGACGGCGTTTCATTTCCAGTCGGAGAAAAACTGGATGAACGATCCCAACGGACCCTTGTACTACAAAGGTTGGTACC ACTTCTTTTACCAGTATAACCCGTTTAGCGCGGTATGGGGTGACATCGCGTGGGGTCATGCTGTGTCCAAGGACTTAGTCCGTTGGGTTCACCTTCCGTT GGCGATGGTCCCAGATCAATGGTACGATGTCAATGGTGTCTGGACTGGATCGGCCACGATCCTCCCGGACGGTAAGATCGTGATGTTGTATACCGGTTCG ACCAACGATTCGGTTCAGGTTCAGTGCCTGGCCTACCCGGCTAACCATGACGACCCTTTGTTACTCGACTGGGTCAAGTACTCGGGGAACCCAGTCTTGG TCCCGCCACCAGGGATCGGGATAAAGGATTTTCGAGACCCCACCACGGCTTGGATGACTTCGGAAGGAAAATGGAGGATAACTGTTGGATCGAAGATCCA CAGGACCGGCATTGCTCTGGTTTACGATACGGAGGATTTCATACATTACGAGCAGAAGCCCGTGCCTCTGCACGGGGTACCAGGTACCGGAATGTGGGAA TGTGTTGACTTTTACCCGGTTTCGATGACCGGTTCGGACGGGTTGGATACGTCCGCCAACAGTCCGGATGTGAAGCATGTGATGAAGGCAAGCCTTGACG ACGATCGACATGATTACTACGCATTGGGGATCTATGACGATCAGACAGGGAAATGGACTCCTGACAATTCTGAAATCGACGTTGGGATAGGGATCAGGTA CGATTATGGCGTATTTTACGCTTCAAAGACGTTCTACGACGAGAGCAAGAAGAGGAGAGTTCTATGGGGTTGGGTTGGGGAGTCTGATAGTGAATCTTCT GATGTTAAGAAAGGATGGGCATGCCTTCAAGGGTTTCCAAGGACAGTTTCCATGGACATCAAAACTAAAACCAACTTGATCCAATGGCCGGTAGAAGAGA TCGAGACTCTAAGGCGAGGAAAACGAGAGTCAAGGTCCTCTTTGGCAACTGATGTTAGTAAGGTGATCCATGGGAGCTATGTTCCTACCCTGGAAGGTGA GAAGATTTCGGTTCGGGTTTTGGTCGACCATTCGATTGTCGAGAGCTTTGCTCAAGGCGGGAGGTCCGTGATCACGGCTAGGGTTTATCCGACAATGGCG ATCTACGGGAATGCGAAGGTGTTCCTGTTCAACAATGCTACAGAGGCTGCTGTTAAGGCTTCTGTTCAGGTCTGGGAAATGGGTTCGGCTTATGAACCGG TTTCCGATTCTGTCCGAAGGGGTCCAAGATTAGGCTTTGCTGTTTTATTCTACATGCTTTATTATTTAGTACTCATGTTTTATTGA
AA sequence Show only first row Show all	>Lus10030278 pacid=23152982 polypeptide=Lus10030278 locus=Lus10030278.g ID=Lus10030278.BGIv1.0 annot-version=v1.0 MADQRTPILPVADPDYIPIPDDSTSPGRVSTRNRSKKLLLFSLSCGLALVWVILGNGSDHSTDIGHTPSTAAKTTSRGKHDGVSEKSNGQQSLFRDYDWE NKTLSWQRTAFHFQSEKNWMNDPNGPLYYKGWYHFFYQYNPFSAVWGDIAWGHAVSKDLVRWVHLPLAMVPDQWYDVNGVWTGSATILPDGKIVMLYTGS TNDSVQVQCLAYPANHDDPLLLDWVKYSGNPVLVPPPGIGIKDFRDPTTAWMTSEGKWRITVGSKIHRTGIALVYDTEDFIHYEQKPVPLHGVPGTGMWE CVDFYPVSMTGSDGLDTSANSPDVKHVMKASLDDDRHDYYALGIYDDQTGKWTPDNSEIDVGIGIRYDYGVFYASKTFYDESKKRRVLWGWVGESDSESS DVKKGWACLQGFPRTVSMDIKTKTNLIQWPVEEIETLRRGKRESRSSLATDVSKVIHGSYVPTLEGEKISVRVLVDHSIVESFAQGGRSVITARVYPTMA IYGNAKVFLFNNATEAAVKASVQVWEMGSAYEPVSDSVRRGPRLGFAVLFYMLYYLVLMFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10030278 [exp]	0	1
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10002785 [exp]	1.0	0.9163
AT4G03220			Protein with RNI-like/FBD-like...		Lus10018509 [exp]	5.7	0.6408
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10039138 [exp]	6.2	0.8951
					Lus10024825 [exp]	6.2	0.8051
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	8.7	0.8093
					Lus10000351 [exp]	10.0	0.8093
					Lus10002886 [exp]	11.2	0.8093
AT5G02930			F-box/RNI-like superfamily pro...		Lus10032255 [exp]	12.2	0.8093
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10006679 [exp]	13.2	0.8093
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10037499 [exp]	13.4	0.6212

Compare expression of checked genes

Lus10030278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.