Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45340 634 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 573 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 504 / 5e-171 Leucine-rich repeat protein kinase family protein (.1) AT5G62710 179 / 2e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 160 / 1e-41 RKL1 receptor-like kinase 1 (.1) AT3G25560 158 / 5e-41 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G41820 152 / 2e-38 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 149 / 4e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 142 / 2e-35 RLK902 receptor-like kinase 902 (.1) AT3G57830 141 / 4e-35 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004032 [exp] 1111 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 567 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 564 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 509 / 8e-173 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 496 / 3e-167 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 160 / 9e-46 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10038875 [exp] 163 / 1e-41 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 155 / 3e-39 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031976 [exp] 139 / 2e-34 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068700 [exp] 688 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 678 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 589 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 585 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 527 / 4e-180 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 512 / 3e-174 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 174 / 2e-45 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G110300 [exp] 154 / 1e-39 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G051700 [exp] 152 / 2e-38 AT2G41820 1343 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G055400 [exp] 151 / 4e-38 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030279 pacid=23153099 polypeptide=Lus10030279 locus=Lus10030279.g ID=Lus10030279.BGIv1.0 annot-version=v1.0 ATGCACACTCATCATCATCTCTTCTTCCTCTTCACCTTCATCCTCCTCTCATACGCCACCGTTTCAGTTTCATCGGACCTCCACATCCTCATGGAAATCA AGACCTCCCTCGACCCAACCGATCAGCTCTTAACCTCATGGACCCCCAACGCCGACCCGTGTTCCTTCGAAGGAGTCGCCTGCAACGAAAACGGCGGCGT AGCCAACATTTCCCTCCAAGGAAAGGGCCTCTCCGGCCATATACCTCCGGCGATTGGTGGGTTGACCAGTCTTACTGGGTTGTACCTCCATTTCAATTCC TTGACCGGTGGGATCCCTGTCGAGATTTCCCAGCTCACTCAGCTTCAAGATTTGTATCTCAATGTCAATAATCTCTCCGGTGATATTCCTCCTCAGCTGT CCAACGTGTCAAATCTTCAAGTTTTGCAGCTGTGTTACAACAAGCTGAGTGGGAATATACCAACCCAGCTAGGATCTCTAATGAAGCTTGGTGTACTTGC TCTTCAGTTCAATAACTTGACTGGTGCAATCCCAGCAAGCTTGGGGGATTTGTATCAGTTGACTAGGTTGGATTTAGGCTTCAATTCCCTCTTTGGTTCC ATCCCTGTCAAGTTAGCCAATGCTCCTTTGCTCCAGTTCTTCGACATCCGTAACAACACCCTCTCCGGCAATGTCCCTCCAGCTCTGGTGAGGCTTGGAA ATGGCTTCCAGTACGACCACAACCAAGATCTATGTGGAGCCGAGTTTTGGAACTTGGCTCCGTGCAGAGTCTACCAGCAATTCTATCCCATTGTTAGCAG CAAACCGAACGCCGCCATGCCTAATTCTCCCATCCCGGAATCTGCAAACTTGCCTCCGGAATGTTCGCCTCCTATCCCACCATCCGCAACGAAGAAAAAA CCACACTTTGATCACTATGGGATCATACTAGGCCTAGTTGGATGCTTCCTTTCCCTTGCTTCTATAATCGTTCTCGCGATATTATGGTGGCATCGCAGGC GAAAGCAGAAGATCGGCAGTGTCACTATCGATGCTTCTGATGATCGCCTCATTACCACAGACAACCAAGGGAAGGAAATCGTCAGCAAGAACAACGCAAA GAGTGGAACCTCGCCACTTCTTAGCATCGAGTATCCAACCGGTTGGGATCCATTAGGCAATACTAGCAACGATTCGGTTTCTCAGGAGTTCCTAGAGAGT TTGATGTTCAACTTGGAAGAAGTCGAACGAGCAACACAGCATTTCTCGGAGGGGAATCTATTCGGGGGGGAAGCTATTGGGGAAGAGCGGCGGGGGATTC TCAGCTACTTACAAGGGTGTTTTACGAGATGGGTCGTTGGTGGCGATCAACATGAAGGGTTGGTGAAGTTGAGAGGGTTTTGCTGCTCAAAGGGGAGAGG GGAGTGCTTTCTCATCTACGATTTTGTTACTAATGGAAACTTGTTACAGTACCTTGATCTCAACAAGGAAGGGGGAACAAGTGATGAGACGATGCTTCTT GAATGGCCCACCAGAGTTTCCATCATCAGTGGAATTGCCAAAGCTAAGAAGGTGATGATTGACAGCCAGTACAATCCACTGCTATCGGATTCCGGCCTGC ACAAGCTTCTAGCCGATGATGTCGTGTTCTCGATCCTCAAAGCCAGTGCCGGCATGGGGTATCTCTTCCCCGAGTACACAACCACTGGCCGGTTCACAGA GAAGAGCGATGTTTACGCGTTTGGAGTAGTAATGCTGCAGATCATTACCGGAAAGAGCAACGTTACTCACCTCACTCGCCATGCATCCGATCCGTCGTCG TCATCATCGTTCGAGGTGGAAGACATTGTCGACCGGAATCTCGGTGGGAGTTTTGAGGAATGGGAGGCGAATCAGCTGGTGAAAATGGCTCTACTTTGCA CTCATGAAGCTCCTAGCCAGAGGCCGAAGATGGAAGATTTGGTAAGGGAAGTTGGTGAGCTTGTTGCTACTCCTTAA
AA sequence Show only first row Show all	>Lus10030279 pacid=23153099 polypeptide=Lus10030279 locus=Lus10030279.g ID=Lus10030279.BGIv1.0 annot-version=v1.0 MHTHHHLFFLFTFILLSYATVSVSSDLHILMEIKTSLDPTDQLLTSWTPNADPCSFEGVACNENGGVANISLQGKGLSGHIPPAIGGLTSLTGLYLHFNS LTGGIPVEISQLTQLQDLYLNVNNLSGDIPPQLSNVSNLQVLQLCYNKLSGNIPTQLGSLMKLGVLALQFNNLTGAIPASLGDLYQLTRLDLGFNSLFGS IPVKLANAPLLQFFDIRNNTLSGNVPPALVRLGNGFQYDHNQDLCGAEFWNLAPCRVYQQFYPIVSSKPNAAMPNSPIPESANLPPECSPPIPPSATKKK PHFDHYGIILGLVGCFLSLASIIVLAILWWHRRRKQKIGSVTIDASDDRLITTDNQGKEIVSKNNAKSGTSPLLSIEYPTGWDPLGNTSNDSVSQEFLES LMFNLEEVERATQHFSEGNLFGGEAIGEERRGILSYLQGCFTRWVVGGDQHEGLVKLRGFCCSKGRGECFLIYDFVTNGNLLQYLDLNKEGGTSDETMLL EWPTRVSIISGIAKAKKVMIDSQYNPLLSDSGLHKLLADDVVFSILKASAGMGYLFPEYTTTGRFTEKSDVYAFGVVMLQIITGKSNVTHLTRHASDPSS SSSFEVEDIVDRNLGGSFEEWEANQLVKMALLCTHEAPSQRPKMEDLVREVGELVATP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	2.4	0.8850
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	2.8	0.8809
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	3.2	0.8904
AT1G16520			unknown protein		Lus10031193 [exp]	4.9	0.8559
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	7.3	0.8518
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	8.4	0.8770
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	11.5	0.8641
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	14.8	0.8214
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	16.3	0.8354
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	17.1	0.8841

Compare expression of checked genes

Lus10030279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.