Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45320 433 / 4e-151 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000786 [exp] 657 / 0 AT2G45320 503 / 3e-179 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068500 [exp] 506 / 1e-179 AT2G45320 522 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030280 pacid=23153130 polypeptide=Lus10030280 locus=Lus10030280.g ID=Lus10030280.BGIv1.0 annot-version=v1.0 ATGGAACTATCATTTCTGGAGCTGCACCAAAGAGTAATTGAAGATCATCAGCCAAAGAAACCGAACAAGAAATTCGATCATCTGGTTTTCGGTCCTACGG CTGGTCAAGGCTTGCCAAATCGTCTGCAATGTGAAGGATCTCGAGCTCTCAACAAAACGCACGCACAAACCACATCCCTTGCTTCGAATGCTGGCGATGG AGTTTCACTTGTAACTGTTTTCACCATCTATAATGAGAGTAGATCGTCTGATTTGGTGACTGTTGGAAATGCTTCGTATAGTAAGACTGAGCGGTCAATG GCCATTTTGAACGTCTTCATTAACTTCATTCAGGCGGCAATGCCACGGAGCAACGTTGTGATTCTAACCGATCCAGCATCCCATCTCTCGGTTCATCAAA ACCACGTCGCTGTATATCCGATTCAAGGCGAATATTCACGCGACAAGCTGATGCTTCAAAGAATCAGACGTAAGAGGAACTTCCTATTGCAGGCGGCAAT GCCACGGAGCAACGTTGTGATTCTAACCGATCCAGCATCCCATCTCTCGGTTCATCAAAACCACGTCGCTGTATATCCGATTCAAGGCGAATATTCACGC GACAAGCTGATGCTTCAAAGAATCAGGTCATACATTACTTTCCTAGACATCAAACTGAAGTATCTCCATAGCAACGGACGAGTCAACCATTACATCTTCA CCGATTCAGATATCGCGGTGGTTGATGATCTAGGACACATATTCCGCGACTATCCGAATTTCCATCTCGCTCTGACCTTCCGTAACAATAAGGGACAGCC TCTAAATTCCGGGTTCATAGCCGTAAGAGGAACACACGACGGACTCTCGAGGTCGAAGTTGTTTCTCGAACGGGTACTGCAAGTATATAGTTCGAAGTAC ATGGCTTCTTCTAGAATGCTTGGAGACCAGTTAGCTCTTGCGTGGGTCGTCAGATCGAGCCGTGATTTCGATTCGAGGAGATTCGGTAAACCGCAAGCTT TCGAAGCAGAGATTGGCGATGCATCGGTGCTGTTTCTGCCGTGTGCTTTGTATAACTGGACGCCACCGGAAGGTGCAGGGCAGTTTCATGGCATGCCTCT GGATGTTAAGGTGGTTCATTTCAAAGGATCGAGGAAGAGACTGATGCTGGAGTCATGGAACAAGTTCAATTCTTCTAGTGATATATCTGATGTGCTGTGT CTCATTCTGATGAGCGGGAGAACTAAGTATGACTTTTGA
AA sequence Show only first row Show all	>Lus10030280 pacid=23153130 polypeptide=Lus10030280 locus=Lus10030280.g ID=Lus10030280.BGIv1.0 annot-version=v1.0 MELSFLELHQRVIEDHQPKKPNKKFDHLVFGPTAGQGLPNRLQCEGSRALNKTHAQTTSLASNAGDGVSLVTVFTIYNESRSSDLVTVGNASYSKTERSM AILNVFINFIQAAMPRSNVVILTDPASHLSVHQNHVAVYPIQGEYSRDKLMLQRIRRKRNFLLQAAMPRSNVVILTDPASHLSVHQNHVAVYPIQGEYSR DKLMLQRIRSYITFLDIKLKYLHSNGRVNHYIFTDSDIAVVDDLGHIFRDYPNFHLALTFRNNKGQPLNSGFIAVRGTHDGLSRSKLFLERVLQVYSSKY MASSRMLGDQLALAWVVRSSRDFDSRRFGKPQAFEAEIGDASVLFLPCALYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNKFNSSSDISDVLC LILMSGRTKYDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45320			unknown protein		Lus10030280 [exp]	0	1
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	2.6	0.8371
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	7.1	0.8218
AT5G63000			Mitochondrial import inner mem...		Lus10027691 [exp]	7.9	0.8151
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	8.0	0.8213
AT1G08220			unknown protein		Lus10005355 [exp]	8.8	0.8318
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	11.2	0.7948
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	13.8	0.7687
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	14.8	0.7919
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	18.7	0.8062
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039052 [exp]	19.0	0.7704

Compare expression of checked genes

Lus10030280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.