Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45300 721 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1) AT1G48860 714 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000788 [exp] 863 / 0 AT2G45300 816 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146400 [exp] 744 / 0 AT2G45300 790 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1) Potri.014G068300 [exp] 613 / 0 AT2G45300 642 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0290 [flax] [poplar] EPT_RTPC PF00275 [flax] [poplar] EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10030282 pacid=23153147 polypeptide=Lus10030282 locus=Lus10030282.g ID=Lus10030282.BGIv1.0 annot-version=v1.0 ATGGCGCTAGTTACCAAAATCTGCGGCGGAGCTAATGCTGTTGCTCTCCCCGCTACATTTGGAACTCGAAGAACAAAATCCATATCCTCGTCGGTCTCGT TTAGATCTTCAACATCTCCTCCGAGTTTGAAGCAACGCCGACGATCGGGCAATGTAGCCGCCGCCGCCGCCGCTCCTCTTCGTGTTTCGGCATCGCTCAC CACGGCAGCTGAGAAGGCTTCCACGGTGCCGGAGGAGGTCGTGCTGCAGCCTATTAAAGACATATCGGGGATTGTGACTCTGCCTGGTTCTAAATCTCTC TCGAATCGGATTCTCCTTCTCGCCGCACTCTCTGAGGGTACAACTGTGGTGGACAACTTGTTGAACAGTGATGATGTTCACTACATGCTTGGAGCATTGA AAACACTCGGACTAAATGTGGAGCATAGCAGTGAGCAGAAGCGCGCCATTGTTGAAGGTTGTGGTGGTGTGTTTCCGGTCGGTAAACTGGCGAAGAACGA TATTTTTCCTCATGCTTTCGTCTACATACTCGATGGGGTACCACGAATGAGAGAGAGACCAATTGGAGATTTGGTTGTTGGTCTGAAGCAGCTTGGTGCT GACGTCACTTGTTCTTCGACTAGCTGCCCTCCCGTCCATGTAAATGGACAGGGAGGCTTGCCAGGTGGAAAGGTTAAGCTTTCCGGATCAATTAGTAGTC AATACTTGACTGCTTTGCTGATGGCTGCTCCTTTGGCCCTCGGAGATGTGGAAATCGAGATTGTTGATAAACTGATTTCAGTTCCTTATGTGGACATGAC ATTGAAGTTAATGGAAAGGTTCGGAGTCGCTGTCGAACACAGTGGTAGTTGGGATCGTTTCTTTGTCAAAGGAGGACAAAAGTACAAATCCCCCGGGAAT GCTTATGTGGAAGGCGATGCTTCGAGTGCTAGTTACTTCCTGGCCGGTGCAGCCATCACCGGTGGGACTATCACTGTTGAAGGTTGTGGGACGAGCAGTT TGCAGGGGGATGTAAAATTCGCTGAAGTTCTCGAGAAAATGGGGGCGAAGGTTATTTGGACAGAGAACAGTGTTACCGTTACAGGGCCTCCCAGAGATGC ATCTGGCAGAAAACATTTGCGAGCTGTCGATGTTAACATGAACAAAATGCCGGATGTTGCGATGACTCTAGCCGTGGTTGCTCTCTATGCTGATGGACCT ACTGCCATAAGAGACGTGGCCAGTTGGAGAGTGAAGGAGACTGAGCGAATGATTGCGATCTGCACAGAACTTCGGAAGCTGGGAGCAACAGTTGAAGAAG GACCAGATTACTGCATAATCACGCCGCCCGAGAAGCTAAACATAGCCGAAATCGACACGTACGATGACCACAGAATGGCGATGGCCTTCTCGCTCGCTGC TTGTGCCGATGTTCCGGTCACCATAAGGGACCCTGGCTGCACTAAGAAGACATTTCCAGATTACTTTGAAGTCCTGGAAAGGTACACCAAGCATTGA
AA sequence Show only first row Show all	>Lus10030282 pacid=23153147 polypeptide=Lus10030282 locus=Lus10030282.g ID=Lus10030282.BGIv1.0 annot-version=v1.0 MALVTKICGGANAVALPATFGTRRTKSISSSVSFRSSTSPPSLKQRRRSGNVAAAAAAPLRVSASLTTAAEKASTVPEEVVLQPIKDISGIVTLPGSKSL SNRILLLAALSEGTTVVDNLLNSDDVHYMLGALKTLGLNVEHSSEQKRAIVEGCGGVFPVGKLAKNDIFPHAFVYILDGVPRMRERPIGDLVVGLKQLGA DVTCSSTSCPPVHVNGQGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVDMTLKLMERFGVAVEHSGSWDRFFVKGGQKYKSPGN AYVEGDASSASYFLAGAAITGGTITVEGCGTSSLQGDVKFAEVLEKMGAKVIWTENSVTVTGPPRDASGRKHLRAVDVNMNKMPDVAMTLAVVALYADGP TAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCIITPPEKLNIAEIDTYDDHRMAMAFSLAACADVPVTIRDPGCTKKTFPDYFEVLERYTKH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	0	1
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10025898 [exp]	2.0	0.9810
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	2.8	0.9827
AT1G58070			unknown protein		Lus10015482 [exp]	4.9	0.9790
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	4.9	0.9801
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	5.3	0.9723
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	5.5	0.9772
AT2G28410			unknown protein		Lus10022579 [exp]	6.2	0.9694
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	6.9	0.9732
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	7.1	0.9746
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10024599 [exp]	7.7	0.9666

Compare expression of checked genes

Lus10030282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.