Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45280 196 / 2e-62 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT3G22880 57 / 4e-10 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000790 [exp] 254 / 1e-86 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068100 [exp] 185 / 6e-59 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.010G081500 [exp] 56 / 6e-10 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08423 [flax] [poplar] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Lus10030284 pacid=23153059 polypeptide=Lus10030284 locus=Lus10030284.g ID=Lus10030284.BGIv1.0 annot-version=v1.0 ATGGCGCGCATTACCACATCTTGTGCCGATCTTGATAACATCCTTGGTGGAGGAATAAGCTGCAAAGAAGTTACAGAAATCGATACGGAAGGTAGCTTCA TGGTGGAGCGAGTCCAACAAATAGCCGAAGCGTGCACAGAGGACATGTCAGAGTACAGAAGCTTCTTAGGCAAAGATGTTCAAGCTCGCCAAGTAGACAT GGGACCCAAGGATTTTCTGGAAAATATATACTACTTCCGTGCCTGCAGTTATACAGAGCAAATTGCGTTGGTGAATTACTTGGACAAGTTTATCTCAGAA CACCACAATGTTAAGTTGGTGGTCATTGACAGTGTTACTTTCCATTTCCGCCAAGATTTCGAGGACTTTGCTCAGAGAACCAGGGTGCTGAGCGGAATGG CACTCAAGCTGATGAAGCTTGCAAAGAAGTTCAATTTAGCGGTATGCAAATAA
AA sequence Show only first row Show all	>Lus10030284 pacid=23153059 polypeptide=Lus10030284 locus=Lus10030284.g ID=Lus10030284.BGIv1.0 annot-version=v1.0 MARITTSCADLDNILGGGISCKEVTEIDTEGSFMVERVQQIAEACTEDMSEYRSFLGKDVQARQVDMGPKDFLENIYYFRACSYTEQIALVNYLDKFISE HHNVKLVVIDSVTFHFRQDFEDFAQRTRVLSGMALKLMKLAKKFNLAVCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Lus10026871 [exp]	11.1	0.7709
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	14.1	0.7809
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10000155 [exp]	21.6	0.7264
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10037214 [exp]	30.4	0.7243
AT5G57120			unknown protein		Lus10001434 [exp]	36.3	0.7284
AT2G33400			unknown protein		Lus10023739 [exp]	48.2	0.7272
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	87.9	0.7113
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	95.0	0.6836
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	96.9	0.6777
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	100.7	0.6888

Compare expression of checked genes

Lus10030284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.