Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45270 495 / 2e-174 GCP1 glycoprotease 1 (.1) AT4G22720 89 / 3e-19 Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000791 [exp] 682 / 0 AT2G45270 664 / 0.0 glycoprotease 1 (.1) Lus10029108 [exp] 67 / 9e-13 AT4G22720 352 / 3e-123 Actin-like ATPase superfamily protein (.1.2) Lus10013054 [exp] 66 / 3e-12 AT4G22720 352 / 6e-123 Actin-like ATPase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067800 [exp] 550 / 0 AT2G45270 655 / 0.0 glycoprotease 1 (.1) Potri.017G029200 [exp] 88 / 5e-19 AT4G22720 652 / 0.0 Actin-like ATPase superfamily protein (.1.2) Potri.007G129400 [exp] 44 / 2e-05 AT4G22720 240 / 4e-80 Actin-like ATPase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00814 [flax] [poplar] TsaD tRNA N6-adenosine threonylcarbamoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030285 pacid=23153186 polypeptide=Lus10030285 locus=Lus10030285.g ID=Lus10030285.BGIv1.0 annot-version=v1.0 ATGCTTTCTTCAACGATTTCCCGCCTAAATATCCTCTCGATTAGCCGTTCTTTTCTAACTCTCAGCACCATCAAGCCCCGCAAGCAACGGTTCTGGAACC CTCCCATTTACGCACACTCCGGCATATCTCTCACTTCTCGAGCATCCTCATCCTTCCCGATTCAGCTTCTCGAGAACGATTTGGTTGTTAGAGGCAATGG AGAAATTCTCAGCCAAGTTATATCATCTCAGGCAGAGTTGCTTGCTCAGTATGGCGGTGTTGCTCCAAAAATGGCTGAAGAAGCTCATTCTCTGGTGATT GATCAGGTTGTGGAAGAAGCACTTGATAAAGCTAATTTGACTGCTGACAATCTATCTGCAGTTGCTGTTACCATTGGTCCTGGTTTAGGCCTTTGTTTGC GTGTGGGAGTGCAGAAAGCTCATAAACTTGCTGGTGCGTTCAACTTACCAATCATTGGGATCCATCATATGGAGGCCCATGCTCTAGTAGCAAGGATCAT TGAGCGCGATTTGCAATTTCCTTTCTTAGCATTGCTTATTTCTGGAGGGCATAATTTGCTTGTCCTCGCACGTGATCTTGGCCACTACTTACAACTCGGG ACCACGATAGACGATGCAATTGGTGAGGCCTATGATAAGACTGCAAAATGGCTCGCACTCGATTTGAGAAGGAGCGGAGGGCCAGCTTTGGAAGAACTCG CTAAATGGGGGAACTCTGACGCCGTCAAATTTTCAACACCAATGAAGCAACACAAGGACTGTAACTTTTCCTACGCTGGCCTGAAAACTCAAGTTAGGCT GGCCATCGAATCCAGAAATATAAGCGTTGAAATTCCCATTTCTGCCGCTAGTGACCAAGATAGAAGCTCCCGGGCCGACATTGCAGCTTCTTTTCAGCGA GTAGCAGTCTTACACCTAGAGGAAAGGTGTGACCGCGCAATTACTTGGGCGAGGAGGATTGAACCGTCGATAAAACATCTGGTGGTATCTGGAGGGGTTG CCTCGAACAAGTATGTGAGGGCTCAACTTCAGGCGGTAGCCGAGAAAAACAATCTGAAGTTTGTTTGCCCTCCTCCTAGCCTTTGCACTGATAATGGTGT GATGGTGGCTTGGACCGGAATCGAGCACTTCCGCATGGGAAGATTCGATCCCCCACCGCCTACAGACGAACCTGAAGATTTCAAGGTATTGTCTATGTAA
AA sequence Show only first row Show all	>Lus10030285 pacid=23153186 polypeptide=Lus10030285 locus=Lus10030285.g ID=Lus10030285.BGIv1.0 annot-version=v1.0 MLSSTISRLNILSISRSFLTLSTIKPRKQRFWNPPIYAHSGISLTSRASSSFPIQLLENDLVVRGNGEILSQVISSQAELLAQYGGVAPKMAEEAHSLVI DQVVEEALDKANLTADNLSAVAVTIGPGLGLCLRVGVQKAHKLAGAFNLPIIGIHHMEAHALVARIIERDLQFPFLALLISGGHNLLVLARDLGHYLQLG TTIDDAIGEAYDKTAKWLALDLRRSGGPALEELAKWGNSDAVKFSTPMKQHKDCNFSYAGLKTQVRLAIESRNISVEIPISAASDQDRSSRADIAASFQR VAVLHLEERCDRAITWARRIEPSIKHLVVSGGVASNKYVRAQLQAVAEKNNLKFVCPPPSLCTDNGVMVAWTGIEHFRMGRFDPPPPTDEPEDFKVLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	0	1
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	1.4	0.9071
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	2.0	0.9044
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	8.2	0.8924
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10000187 [exp]	10.0	0.8541
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	11.1	0.8493
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	12.4	0.8935
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	13.0	0.8619
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	14.4	0.8684
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	16.2	0.8663
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10017023 [exp]	16.4	0.8855

Compare expression of checked genes

Lus10030285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.