Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 405 / 5e-135 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 357 / 1e-116 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 353 / 8e-115 Major facilitator superfamily protein (.1) AT3G54140 276 / 7e-86 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 261 / 6e-80 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 259 / 4e-79 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 255 / 1e-77 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G26690 232 / 4e-69 Major facilitator superfamily protein (.1) AT5G46050 228 / 3e-67 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT1G59740 221 / 1e-64 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030287 [exp] 734 / 0 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10000793 [exp] 506 / 2e-179 AT1G32450 273 / 6e-88 nitrate transporter 1.5 (.1) Lus10030945 [exp] 385 / 8e-127 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10000792 [exp] 374 / 8e-127 AT1G32450 256 / 2e-80 nitrate transporter 1.5 (.1) Lus10040102 [exp] 384 / 3e-126 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 372 / 2e-122 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 367 / 2e-120 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10039204 [exp] 333 / 6e-107 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10013736 [exp] 332 / 9e-107 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088800 [exp] 410 / 4e-137 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.001G145200 [exp] 408 / 1e-136 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 378 / 1e-124 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 375 / 2e-123 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 364 / 3e-119 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 284 / 9e-89 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 267 / 3e-82 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 265 / 9e-82 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 252 / 2e-76 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 248 / 6e-75 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030286 pacid=23153179 polypeptide=Lus10030286 locus=Lus10030286.g ID=Lus10030286.BGIv1.0 annot-version=v1.0 ATGAGCATCCGGAAATTCTGTTTCAGCTGGAGTGTCATGGTACTGTTTGAGAAATCAGTGCTAAGGCAAACCAACGGACAAGCTGCCAACTCCTTCAGTA ATTGGGTTGGGACTTCTTATCTCTTCGGCCTACTCAGTGCACTCCTCAGCGACTCTTCTCTCGATCGCTTCTTCACTTGTATCCTTTCTCAAGCCTTTTT TATCGCGGGAGCAACATCACTAACTTTGATCACACAATTCCTCCTCCTAAAGCCTCCAGGCTGCGGCACGCTGATGTCACAATGCGACCCGCCAAGGCCC TTCGAGGTCGTCATCTACTACATCTCGATCTACCTAATAGCATTTGGGATCGGAGCAGCGGACCCAGCGCTGGCCGCGCTGGGTGCAGACCAGTTCGACG AGGAGGACCCCAAAGAGAAGAAATCCAAGACCTTCTACAGCTACTTCTATGTAGCCGTGACCCTCGGTTGCCTGGTAGCCGAAACCGGTTTGGCTTACGT GTACAGCTTGGGTCACTGGATATTGGGGCTTTGGCTGTGCACTGCGGCTTCTGTAGTTGCCTACTTGTTGCTCTCGAGTGGGACTTTGAGGTACAGGCGT TTCAAGTCTGCTTCGGGAAACCCCGCCTCGAGATTCTCCCAGGTGATCATGGCTTCGGTTCGCAAGAAGATGGGGCTCGAGGTTCCGGTGAGTAATGAGC AAGTGCTTTACCATCAGCCGCTGAATGAAAGAGGGCTGCTGACTACCCGAGCCAAAATTTCCCCAACTCAACTCGGCTCGTTTCTGGACCGTGCAGCGAT GGTAACCCTCGAGGACATGAATCAGAGATCGCAAGGCCTCCCTCCAAATCCATGGCTGCTCTGCAGTGTCACGCAAGTCGAAGAAGCAAAGTGCATCCTA CGACTGATGTCAATCTGGCTCTGCTCGATCCCTTCCTCCTTAGTATTCGTACAAGCCATGTCTCTCTTCCTCGAACAAGGCACGGCCATGAACAACAAGC TCGGCAACTTGAGCTTCCATTTCCCACCGGCCAGCATGCCTGTCTTTGACATGGCCACAACCTCAACTTCCATCCTCCTCTACACCCAGCTCATCCTCCC CTTATACATCAAGCTTACAAAAAAACAATCATCTTCTCCTCCAAAGCCTATGAACGATCTGCACAAGATCGAGATCGGGCTGGCTTTCGGAATAGCATCC ATGGTAGCTGCGGGGATCACGGAGCAAGCGAGGCTGAGACAAGCTGTTGGAGAAACGAGCTCGTTGAGTATTTTCTGGTTGGCTCCGCAGTACGTACTAG TGGGAGTTTCCGAGGCGCTAGTGGCGGTTGCTCAGATGGAGTTCTTCTCGGCTCAGGCTCCTGATGCAATGAAGAGCTTCGGGATGGGGCTGCCGATGAT TTCGACTGCGTTTGGTAACTATTTCTGCAGCATCCTTCTTACTGTGGTGATGAAGATTACATCTGGAGATGATGGTGAGCATCCCGGGTGGGTGAACGAC GGTCATTTGGATAGATTCTACTTCTTGTCTGCAGCTATACTGGTGTTGAATCTGGGAATCTTTGTAGCTGTTGCTAAGAAGTTCAAACCTATTTCGTTGG AAAAGCGTTAG
AA sequence Show only first row Show all	>Lus10030286 pacid=23153179 polypeptide=Lus10030286 locus=Lus10030286.g ID=Lus10030286.BGIv1.0 annot-version=v1.0 MSIRKFCFSWSVMVLFEKSVLRQTNGQAANSFSNWVGTSYLFGLLSALLSDSSLDRFFTCILSQAFFIAGATSLTLITQFLLLKPPGCGTLMSQCDPPRP FEVVIYYISIYLIAFGIGAADPALAALGADQFDEEDPKEKKSKTFYSYFYVAVTLGCLVAETGLAYVYSLGHWILGLWLCTAASVVAYLLLSSGTLRYRR FKSASGNPASRFSQVIMASVRKKMGLEVPVSNEQVLYHQPLNERGLLTTRAKISPTQLGSFLDRAAMVTLEDMNQRSQGLPPNPWLLCSVTQVEEAKCIL RLMSIWLCSIPSSLVFVQAMSLFLEQGTAMNNKLGNLSFHFPPASMPVFDMATTSTSILLYTQLILPLYIKLTKKQSSSPPKPMNDLHKIEIGLAFGIAS MVAAGITEQARLRQAVGETSSLSIFWLAPQYVLVGVSEALVAVAQMEFFSAQAPDAMKSFGMGLPMISTAFGNYFCSILLTVVMKITSGDDGEHPGWVND GHLDRFYFLSAAILVLNLGIFVAVAKKFKPISLEKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	1.0	1.0000
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	1.7	1.0000
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	2.0	0.9928
					Lus10033096 [exp]	2.0	1.0000
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	2.6	0.9795
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	3.0	0.9723
AT3G44150			unknown protein		Lus10021005 [exp]	3.2	0.9835
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016285 [exp]	3.3	0.9475
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	3.5	0.9817
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10022646 [exp]	3.7	0.9131

Compare expression of checked genes

Lus10030286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.