Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 493 / 2e-168 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 459 / 1e-155 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 426 / 2e-142 Major facilitator superfamily protein (.1) AT3G54140 370 / 4e-121 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 338 / 1e-108 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 337 / 2e-108 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 337 / 7e-108 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 293 / 1e-91 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 290 / 5e-90 Major facilitator superfamily protein (.1) AT5G46040 286 / 1e-88 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030286 [exp] 726 / 0 AT1G32450 446 / 7e-151 nitrate transporter 1.5 (.1) Lus10000794 [exp] 511 / 1e-179 AT1G32450 242 / 4e-75 nitrate transporter 1.5 (.1) Lus10030945 [exp] 486 / 2e-165 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 487 / 3e-165 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 481 / 2e-163 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 468 / 2e-158 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10000793 [exp] 454 / 3e-158 AT1G32450 273 / 6e-88 nitrate transporter 1.5 (.1) Lus10000792 [exp] 448 / 7e-155 AT1G32450 256 / 2e-80 nitrate transporter 1.5 (.1) Lus10013736 [exp] 383 / 2e-125 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 523 / 2e-180 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 520 / 5e-179 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 482 / 3e-164 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 427 / 5e-143 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 424 / 2e-141 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 363 / 2e-118 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 351 / 1e-113 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 346 / 1e-111 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 339 / 4e-109 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 335 / 1e-107 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10030287 pacid=23152997 polypeptide=Lus10030287 locus=Lus10030287.g ID=Lus10030287.BGIv1.0 annot-version=v1.0 ATGACGACGGAGAGTTCTGCACGTCCAGACGGCGGCAGCATTCTGTTTCAGCATTTAGAGCTGGAGAAAGGAGCCGACGATGATTCGTCGTCAAGCTACA CGAGAGATGGAACAGTTGATCGGCATGGGAAACCGGCTTTGAAGAACAAGAGCGGTGGTTGGAGATGCGGCCTCCTTGTTTTGTTGAATCTGGGGCTGCT GACATTATCCATAGCTGGAGTGTCAGTGAGCATGGTCCTCTTTGAGAAATCGGTGCTAAGGCAAACCAACGCAAGAGCTGCCGACACCTTCAGTAATTGG TTAGGGACTTGCTATCTCTTCTCCCTCTTCGGTGCCCTCCTCAGCGACTCCCCTCTCGGCCGCTTCTACACTGTCGTCGTCTCTGAAGTCTTTCTCATCG TGGGAGTTATAATATTGGCCGTGATCACACAATTCCTCCTCCTAAAGCCTAAAGGCTGCGGCACACTGGCATCACCATGCAAACCCCCAACCCCATTCCA GCTCGCCATCTACTACATCTCTATCTACATGATAGCATTCGGGAGCGGAGCAGCGGACCCAGCGCTGGCCGCGCTGGGTGCAGACCAGTTCGATGAGGAG AACCCCGACGAGAAGCATTCCAAGACCTCCTTCTACAGCTACTTCTACGTGGCCCTGAGTCTCGGTTGCTTGGTGGCCGAAACCGGTCTGGCTTACGTGT ACAGCTTCGGCCACTGGGTTTTGGGGTTCTGGCTTTGCACTTTGGCTGCTGTCGTTGCGTATCTGTTGCTCTTGTGTGGCACTTTCAGGTACAGGCATTC CAAGCCTGCTTCCGGAAACCCGGTCTCGAGATTCTCCCAGGTGATCGTGGCTTCGGTTCGGAAGATGAGGCTCGAGGTTCCAGTGAATAACGAGCAAGGG CTTTACTATCAGCCCCTTAATGAAAGAGGTGATGCTGGTAATAGGAGGATTCTCCGTACAAATGGATTCAGGCAAGTGTTTCTGGATCGTGCTGCGATGG TAAGCCCCGAGGACACGGATCAAATATCGCAAGGCTTACCTCCGAATCCATGGAAGCTTTGTCCAGTCACGCAAGTCGAAGAAGTGAAGTGCATTCTACG ACTGATGCCAATTTGGCTCTGCTCTATCCCTTCCTCCTTAGTATTCGTACAAGCCATGTCACTCTTCCTCGAACAAGGCTCATCCATGAACAACAAGGTC GGAAAGAGCTTCCATTTCCCACCGGCCAGCATGCCGATCTTCGACATGGCCACAACCTCAGCTTTCATCATCCTTTACAGCAACCTGTTCTTCCCCTTAT ACGTCAAGCTGACAAAAAGGGAATCAACTCCCAAGCCGATGAATGAGGTGCTCAAAATGGAGATTGGGGTGGCATTCGGAATAGCATCTATGGTAGTTTC GGGAATCACAGAGCAAGCTCGGTTAAGACACGCCATCCCAGGGAGTACGAAAGACACCACGAGCTCCTTAAGCATCTTCTGGCTAGCTCCTCAGTATATT CTTGTAGGAGTCTCCGAGGCGCTTGTGACGGTTGCTCAGATGCAGTTCTTCGCAGCTCAGGCTCCCGATGCGATGAAGAGCTTCGGGATAGGGCTGCCGA TGGTTTCAACTGCATTCGGTAACTATTTCAACAGCATCCTTCTTACGGTGGTGATGAAGATCACAGCTAGAGACCGCGAGCATCCGGGGTGGGTCCCTCC AAATCTCAACGAGGGTCACTTGGACAGATTCTACTTCTTGTCTGCAGCTATACTGATGTTCAACCTGGGAATCTTTGTAGTTGTTGCTAAGAAGTTCAAG CCCATCACTTTGGAAAAGCGTTAG
AA sequence Show only first row Show all	>Lus10030287 pacid=23152997 polypeptide=Lus10030287 locus=Lus10030287.g ID=Lus10030287.BGIv1.0 annot-version=v1.0 MTTESSARPDGGSILFQHLELEKGADDDSSSSYTRDGTVDRHGKPALKNKSGGWRCGLLVLLNLGLLTLSIAGVSVSMVLFEKSVLRQTNARAADTFSNW LGTCYLFSLFGALLSDSPLGRFYTVVVSEVFLIVGVIILAVITQFLLLKPKGCGTLASPCKPPTPFQLAIYYISIYMIAFGSGAADPALAALGADQFDEE NPDEKHSKTSFYSYFYVALSLGCLVAETGLAYVYSFGHWVLGFWLCTLAAVVAYLLLLCGTFRYRHSKPASGNPVSRFSQVIVASVRKMRLEVPVNNEQG LYYQPLNERGDAGNRRILRTNGFRQVFLDRAAMVSPEDTDQISQGLPPNPWKLCPVTQVEEVKCILRLMPIWLCSIPSSLVFVQAMSLFLEQGSSMNNKV GKSFHFPPASMPIFDMATTSAFIILYSNLFFPLYVKLTKRESTPKPMNEVLKMEIGVAFGIASMVVSGITEQARLRHAIPGSTKDTTSSLSIFWLAPQYI LVGVSEALVTVAQMQFFAAQAPDAMKSFGIGLPMVSTAFGNYFNSILLTVVMKITARDREHPGWVPPNLNEGHLDRFYFLSAAILMFNLGIFVVVAKKFK PITLEKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030287 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	11.5	0.6868
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	12.7	0.7754
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036120 [exp]	18.1	0.7334
AT2G40390			unknown protein		Lus10009844 [exp]	24.9	0.7267
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	42.4	0.7153
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	48.0	0.6253
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	53.4	0.7051
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	53.7	0.7030
AT1G30050			unknown protein		Lus10035609 [exp]	60.9	0.7014
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	64.9	0.6989

Compare expression of checked genes

Lus10030287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.