Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08900 616 / 0 ARGAH1 arginine amidohydrolase 1, arginase (.1) AT4G08870 576 / 0 ARGAH2 arginine amidohydrolase 2, Arginase/deacetylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000795 [exp] 685 / 0 AT4G08900 619 / 0.0 arginine amidohydrolase 1, arginase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146200 [exp] 639 / 0 AT4G08900 625 / 0.0 arginine amidohydrolase 1, arginase (.1) Potri.014G067700 [exp] 636 / 0 AT4G08900 614 / 0.0 arginine amidohydrolase 1, arginase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00491 [flax] [poplar] Arginase Arginase family
Representative CDS sequence Show only first row Show all	>Lus10030288 pacid=23153032 polypeptide=Lus10030288 locus=Lus10030288.g ID=Lus10030288.BGIv1.0 annot-version=v1.0 ATGTCGATGATACTGCGGAGAGGGATACACTACTTGGAGAGACTGAAGGCCGCAAATGTTCCTAATGATTTGATTGAGAGAGGCCAGAACCGAGTCATAG ACGCTTCCCTCACTCTAATCCGGGAGAGAGCAAAGCTCAAGGGAGAGCTTCTACGTGCGTTGGGAGGAGTTACAGCAACGGCAACTTTGCTTGGAGTACC TTTGGGGCATAACTCTTCATTTCTTCAAGGCCCGGCTTTCGCTCCTCCCCGAATTAGGGAGGCCATATGGTGTGATAGCACAAACTCGACCACCGAAGAA GGGCAAGAGTTGCATGATCCACGTGTTCTAACTGATGTTGGTGATGTCCCTGTACAAGAAATCCGAGATTGTGGTGTGGATGACGACCGATTGATGAATG TCATCAGTGAGTCGGTCAAAGTTGTGATGGAAGAGGCACCGTTACGCCCTTTGGTTCTAGGTGGCGATCATTCAATATCTTTTCCAGTAGTAAGAGCTGT ATCTGAGAAACTTGGAGGGCCGGTGGATATCCTTCATCTTGATGCTCATCCTGATATCTACGACTGCTTTGAAGGAAACAAATACTCTCATGCTTCTTCA TTTGCCCGGATCATGGAAGGTGGTTACGCTCGGCGACTTTTGCAAGTGGGCATAAGATCTATAACAAAGGAAGGTCGTGAGCAAGGCAAAAGGTTCGGAG TAGAACAATACGAAATGCGAACTTTCTCCAAAGACAGAGAGCTTTTAGAAAATCTGAAACTCGGGGAAGGGGTGAAAGGTGTGTACATCTCGGTAGACGT GGACTGTCTCGATCCTGCATTTGCTCCTGGCGTTTCTCACATAGAGCCGGGCGGCCTCTCTTTCCGCGACGTCCTCAACATCCTCCACAATATTCAAGCT GATGTCGTTGCGGCAGATGTCGTCGAATTCAACCCGCAAAGAGACACAGTCGACGGGATGACTGCCATGGTTGCTGCTAAGCTAGTCAGAGAGCTCACTG CAAAAATATCTAAATGA
AA sequence Show only first row Show all	>Lus10030288 pacid=23153032 polypeptide=Lus10030288 locus=Lus10030288.g ID=Lus10030288.BGIv1.0 annot-version=v1.0 MSMILRRGIHYLERLKAANVPNDLIERGQNRVIDASLTLIRERAKLKGELLRALGGVTATATLLGVPLGHNSSFLQGPAFAPPRIREAIWCDSTNSTTEE GQELHDPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKVVMEEAPLRPLVLGGDHSISFPVVRAVSEKLGGPVDILHLDAHPDIYDCFEGNKYSHASS FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDRELLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNIQA DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10030288 [exp]	0	1
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	4.0	0.8141
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	8.1	0.7860
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Lus10005352 [exp]	12.1	0.7646
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	12.2	0.7714
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	16.2	0.7619
AT1G31780			unknown protein		Lus10037280 [exp]	19.0	0.7840
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	19.4	0.7645
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	21.1	0.7713
AT1G53290			Galactosyltransferase family p...		Lus10013683 [exp]	32.8	0.7323
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	34.7	0.7549

Compare expression of checked genes

Lus10030288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.